KEGG   Gossypium raimondii: 105802677
Entry
105802677         CDS       T04129                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13]
Organism
gra  Gossypium raimondii
Pathway
gra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105802677
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gra03019]
    105802677
   03036 Chromosome and associated proteins [BR:gra03036]
    105802677
Enzymes [BR:gra01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     105802677
Messenger RNA biogenesis [BR:gra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     105802677
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     105802677
Chromosome and associated proteins [BR:gra03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    105802677
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 105802677
NCBI-ProteinID: XP_012489916
UniProt: A0A0D2SH75
Position
11:complement(55983818..55989641)
AA seq 494 aa
MNSRGRYPPGIGVGRGGGVNANPNFQSRPSQQHYVQRNLLQNHHHFQQQHQQQQQQHQQQ
LWLRRDQLPGGNDSSVVDEVEKTVQSEAVDSSSQDWKARLNVPPPDTRYKTEDVTATKGN
EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE
KIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVH
LLVGTPGRILDLAKKGVCILKDCSMLIMDEADKLLSPEFQPSIEQLIHFLPANRQILMFS
ATFPVTVKDFKDRYLKKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQS
IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG
IDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI
KQIPPHIDQAIYCR
NT seq 1485 nt   +upstreamnt  +downstreamnt
atgaatagtagagggaggtatccaccgggaatcggtgttggccgagggggcggagtgaac
gcgaaccctaactttcagtcgaggccttcgcaacaacactacgtgcagaggaatttgttg
cagaatcaccatcactttcaacaacaacaccagcagcaacaacaacagcatcagcaacag
ctgtggctcagacgagaccagttgcccggcggcaatgactccagtgtggtcgatgaggtc
gagaagaccgtacaatctgaagccgtcgactctagttcgcaagattggaaggcaaggctg
aacgtaccgccacctgatacacgctacaaaacagaggacgtgacagctaccaaaggaaat
gaatttgaggactattttctgaaacgtgaacttcttatgggaatatatgagaagggtttt
gaaagaccatcccctattcaggaagagagtattcctattgctttaaccggaagtgatatt
cttgctagagccaaaaatggcactgggaagacagcagcattttgtattcctgccttggaa
aaaattgaccaagataacaatgttattcaagttgtcatacttgttccaacacgagaactg
gctcttcagacatcacaagtgtgcaaggagctcgggaagcatttacaaattcaagtcatg
gtcacaactggaggtaccagtctcaaggatgatatcatgcgactgtatcaaccagttcat
ttgctggttggaactcctggcagaattcttgaccttgctaaaaagggtgtttgcattttg
aaagattgttcaatgcttattatggacgaggcagataaacttctgtctccagagtttcaa
ccttctatagagcagttgatacattttcttccagcaaatcgtcaaattttgatgttttca
gccacatttcctgttactgttaaggacttcaaagacagatacctaaaaaaaccttatatt
attaatctaatggatgagcttactctgaagggtattacacaatattatgcttttgtggaa
gaaagacagaaagtccattgcctgaatacccttttctctaagctgcaaataaaccaatca
atcattttctgcaactcggtcaatcgggtggagctgttggccaagaaaattacggaactt
ggctattcttgcttttatattcacgcaaaaatgcttcaagaccatcgtaacagagtattt
catgatttccgcaacggtgcatgcaggaaccttgtttgtactgatctttttacaaggggt
atagatatccaagctgtgaatgttgttattaacttcgacttccccaagaactcagaaaca
taccttcatagagttggtcgatcaggaaggtttggtcatcttggattggctgtgaatttg
atcacttacgaggaccgctttaacttgtataggattgaacaagaacttgggactgaaatt
aagcaaattcctccacacatcgatcaggcaatttactgccgatga

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