KEGG   Gordonia rubripertincta: GCWB2_05430
Entry
GCWB2_05430       CDS       T05629                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
gru  Gordonia rubripertincta
Pathway
gru03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gru00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GCWB2_05430 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gru03021]
    GCWB2_05430 (rpoB)
   03400 DNA repair and recombination proteins [BR:gru03400]
    GCWB2_05430 (rpoB)
Enzymes [BR:gru01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GCWB2_05430 (rpoB)
Transcription machinery [BR:gru03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GCWB2_05430 (rpoB)
DNA repair and recombination proteins [BR:gru03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GCWB2_05430 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Peptidase_M23
Other DBs
NCBI-ProteinID: ASR01907
UniProt: A0A222TG95
Position
1171397..1174903
AA seq 1168 aa
MLEGRILAVNRQSTSTIPGAPHRASFAKISEPLEVPGLLDLQLDSFEWLVGSPEWRAKAI
ARGEENPTGGLEDILHELSPIEDFSGSMSLSFSEPHFDEVKASVEECKDKDMTYAAPLFV
TAEFINNNTGEIKSQTVFMGDFPIMTDKGSFIINGTERVVVSQLVRSPGVYFDAAIDKAT
EKTLHTVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGFTTEEITERFGFS
EIMMSTLEKDNTANQDEALLEVYRKLRPGEPPTKESAENLLENLFFKDKRYDLARVGRYK
VNKKLGLTGNPMTGESTLTREDIIATVEYLVRLHEADPHTTTYMTVPGGVEVPVEVDDID
HFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFF
GTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEG
PNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIQYMTADEEDRFLIGQANTNFDGS
GRITDERVLVRKKGSEVEFVGATDVEYLDVSPRQMVSVATAMIPFLEHDDANRALMGANM
QRQAVPLVRNESPLVGTGMELRAAVDAGDVIVSSKTGVVEEVSADYITVMSDEGTRDTYR
MRKFARSNHGTCANQRPIVDEGQRVEAGQVLADGPCTENGEMALGKNLLVAIMPWEGHNY
EDAIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVR
IGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVR
VFSRDDDDDLAPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPQEDMPFLPDGT
PVDIILNTHGVPRRMNIGQILETHLGWIAKAGWNINVAEGVPEWASNLPEDMYSAEPNTN
TATPVFDGAREEELTGLLSSTLPNRDGEVMVNGDGKATLFDGRSGEPFPYPVAVGYMYII
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMHDTD
DEDLERAAANLGINLSRNESATVDDLAN
NT seq 3507 nt   +upstreamnt  +downstreamnt
gtgttggaaggacgcatcttggcagtcaaccgccagtccacctcaacaatccccggcgcg
ccgcatcgcgcgtcgtttgcaaagatcagcgagccgctggaggttcccggcctcctcgac
ctccaactcgattccttcgaatggctcgtcgggtccccggagtggcgcgccaaggcgatc
gcccgcggagaagagaacccgacgggcgggctggaggacatcctccacgagctgtccccg
atcgaggacttctccgggtcgatgtccctgtcgttctccgagccgcacttcgacgaggtc
aaggcctccgtcgaggagtgcaaggacaaggacatgacctacgcggcgccgctgttcgtc
accgctgagttcatcaacaacaacaccggtgagatcaagtcgcagaccgtcttcatgggc
gacttcccgatcatgaccgacaagggcagcttcatcatcaacggcaccgagcgtgtcgtg
gtgagccagctggtccgcagccccggcgtgtacttcgacgccgcgatcgacaaggccacc
gagaagaccctgcacaccgtcaaggtgatcccgggtcgcggtgcgtggctggagttcgac
gtcgacaagcgcgacaccgtgggtgtgcgtatcgaccgcaagcgccgtcagccggtcacc
gtgctgctcaaggccctcggcttcaccaccgaggagatcaccgagcgcttcggcttctcc
gagatcatgatgtcgaccctggagaaggacaacaccgccaaccaggacgaggcgctgctc
gaggtctaccgcaagctgcgtccgggtgagccgccgaccaaggagtccgcggagaacctc
ctggagaacctgttcttcaaggacaagcgctacgacctcgcccgtgtgggccgctacaag
gtcaacaagaagctgggtctgacgggcaacccgatgaccggcgagtcgaccctgacccgc
gaggacatcatcgcgaccgtcgagtacctggtgcgtctgcacgaggccgacccgcacacg
accacctacatgaccgtccccggtggcgtggaggttcccgtcgaggtcgacgacatcgac
cacttcggcaaccgtcgtctgcgtaccgtcggcgagctgatccagaaccagatccgcgtg
ggcctctcgcgtatggagcgtgtcgtgcgtgagcgcatgaccacccaggacgtcgaggcg
atcaccccgcagaccctgatcaacatccgtcccgtcgtggcggcgatcaaggagttcttc
ggcaccagccagctgtcgcagttcatggaccagaacaacccgctgtcgggtctgacccac
aagcgtcgtctgtcggcgctgggcccgggcggtctgagccgtgagcgtgccggcctcgag
gtgcgcgacgtccacccgtcgcactacggccgtatgtgcccgatcgagacccctgagggt
ccgaacatcggtctgatcggttcgctctcggtgtacgcacgggtcaacccgttcggtttc
atcgagaccccgtaccgcaaggtcgtcgacggtgtcgtcaccgacgagatccagtacatg
accgccgacgaggaggatcgcttcctcatcggtcaggccaacaccaacttcgacggcagc
gggcgtatcaccgacgagcgtgtgctggtgcgcaagaagggctccgaggtggagttcgtg
ggcgccaccgatgtcgagtacctcgacgtctcgccgcgccagatggtgtcggtcgcgacc
gcgatgatcccgttcctcgagcacgacgacgcgaaccgcgccctgatgggtgcgaacatg
cagcgtcaggccgtgccgctggtgcgcaacgagtcgccgctggtcggtaccggtatggag
ctccgtgccgccgtcgacgccggtgacgtcatcgtgtcgtccaagaccggtgtggtggaa
gaggtctcggccgactacatcaccgtcatgtccgacgagggcacccgtgacacctaccgg
atgcgcaagttcgcgcgttcgaaccacggcacctgcgccaaccagcgtccgatcgtggac
gagggccagcgcgtggaggccggccaggttctcgccgacggcccctgcaccgagaacggt
gagatggcgctcggcaagaacctgctcgtggcgatcatgccgtgggagggccacaactac
gaggacgcgatcatcctgtcgcagcgcctcgtggaagaggacgtcctgacctcgatccac
atcgaggagcacgagatcgacgcccgcgacaccaagctcggtgccgaggagatcacccgg
gacatcccgaacgtctccgacgaggtcctcgccgacctcgacgagcgcggcatcgtgcgc
atcggtgccgaggtccgcgacggcgacatcctggtcggcaaggtcaccccgaagggcgag
accgagctgaccccggaagagcgtctgctgcgtgccatcttcggtgagaaggcccgtgag
gtccgcgacacctcgctgaaggtgccccacggcgagaccggcaaggtcatcggcgtgcgc
gtgttcagccgcgacgacgacgacgatctcgcgcccggcgtcaacgagctggtccgcgtc
tacgtggcccagaagcgcaagatccaggacggcgacaagctcgccggccgtcacggcaac
aagggcgtcatcggcaagatcctccctcaggaggacatgccgttcctgcccgacggcacc
ccggtcgacatcatcctgaacacccacggtgtcccgcgtcgtatgaacatcggccagatc
ctggagacccacctcgggtggatcgccaaggccggctggaacatcaacgtggccgagggc
gtcccggagtgggcctcgaacctgcccgaggacatgtactcggcggagcccaacaccaac
accgccaccccggtgttcgacggtgcgcgtgaggaggagctgaccggactgctgtcctcg
acgctgcccaaccgcgacggcgaggtcatggtcaacggcgacggcaaggcgacgctgttc
gacggtcgttccggcgagccgttcccgtaccccgtggcggtcggctacatgtacatcatc
aagctgcaccacctggtcgacgacaagatccacgctcgttcgaccggtccgtactcgatg
atcacccagcagccgctgggtggtaaggcgcagttcggtggtcagcgcttcggtgagatg
gagtgttgggcgatgcaggcgtacggcgccgcctacaccctgcaggagctgctcaccatc
aagtcggacgacgtggtgggccgcgtgaaggtctacgaggcgatcgtcaagggcgagaac
atcccggaaccgggtatccccgagtcgttcaaggtgcttctgaaggagcttcagtcgctc
tgcctgaacgtcgaggtgctcagctccgacggtgccgccatcgagatgcacgacaccgac
gacgaggacctggagcgcgctgctgccaacctcggaatcaacctgtcgcgcaacgagtcg
gcaaccgtcgacgacctcgccaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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