KEGG   Gemella sanguinis: FOC50_08245
Entry
FOC50_08245       CDS       T06314                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
gsa  Gemella sanguinis
Pathway
gsa03030  DNA replication
gsa03410  Base excision repair
gsa03420  Nucleotide excision repair
gsa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gsa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FOC50_08245 (ligA)
   03410 Base excision repair
    FOC50_08245 (ligA)
   03420 Nucleotide excision repair
    FOC50_08245 (ligA)
   03430 Mismatch repair
    FOC50_08245 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gsa03032]
    FOC50_08245 (ligA)
   03400 DNA repair and recombination proteins [BR:gsa03400]
    FOC50_08245 (ligA)
Enzymes [BR:gsa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FOC50_08245 (ligA)
DNA replication proteins [BR:gsa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FOC50_08245 (ligA)
DNA repair and recombination proteins [BR:gsa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FOC50_08245 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FOC50_08245 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     FOC50_08245 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FOC50_08245 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH RNA_ligase Bap31_Bap29_C BRCT_2 Mut7-C zf-C4_Topoisom Relaxase_C
Other DBs
NCBI-ProteinID: QGS08255
Position
1732015..1734015
AA seq 666 aa
MKEIKEEIYKLVKLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEKEYPELIQENSPTQ
RVGDVVLSEFEKVTHKVPMLSLSNTFSTEDLRDFDNRIKKVVANRKIEYICELKIDGLAI
SINYVNGKLISAATRGDGTVGEEVTDNIKTIFSIPKVLKDNKTFEVRGEVYLPKKSFNIL
NEERKENNEVLFANPRNAAAGSLRQLDSKITAQRRLSAFIYSVVGDNTIESQLQALKTAE
EYELPVNNNYKLCKNIDEVINYIEYWDINRKNLPYEIDGIVIKVNSYSLQEEIGYTQKSP
RWATAFKFPEEELATKLLDVELSVGRTGIVTPVAQLDPIVISGSTVSKASLHNKDVIDEL
DIHIGDMVIVKKAGEIIPKVVRVLKELRLENSEKYIMPNRCPSCNSELVSKKDDPFIRCV
NPECPEQNIRKIIHFASRDALNIEGLGDKVVATLYEQGIISHTIDLFSLEREKLIDLDRM
GEKSVDNLLKAIENSKNSSLDKVIYALGILNVGKKAAKILAEKYLNLTTLMTATVDELIN
LPDIGLITAESVIDFLSNEINIKFINDLISIGMNPQYKVQKIEDDNIFSGKTIVLTGKLV
ELTRNEAKEYLEKLGAKVTGSVTTKTDLVLAGEKAGSKLAKAEQLGIQVISEEEFISMLG
EKKVNG
NT seq 2001 nt   +upstreamnt  +downstreamnt
atgaaagaaataaaagaagagatttataaactagtaaaattattaaataagtattcttat
gactattacgttgaggataatcctcaaataagtgatactgaatatgatacactttataag
caactcgaaaaattagagaaagaatatccagagttaattcaagaaaattctcctacacaa
agagtaggagatgttgtgttatcagaatttgagaaggtcacacacaaagtccctatgcta
agtttatctaatactttctctactgaagatttaagggactttgataatcgtataaaaaaa
gtagtagcaaatagaaaaatagaatatatctgtgaattgaaaattgatggtcttgcaatt
tcaataaattatgtaaatggaaaattaataagtgcagcaactcgtggtgatggaacagtt
ggtgaagaagttactgataatattaagactatattttctattccaaaagtattaaaagac
aataaaacttttgaagtcagaggtgaggtatatttacctaagaaatcatttaatatttta
aatgaagaacgtaaagagaataatgaagtattatttgcaaatccaagaaatgcagcagca
ggttcattaagacaattagattctaaaattactgcccaaagacgattatcagcctttata
tattcggtagtaggagataatactattgaatcacaattacaagcattaaaaactgcagaa
gaatatgaattgcctgtaaataataattataagctttgtaaaaatattgatgaagtaata
aattatatagaatattgggatataaatagaaaaaatttaccttatgaaattgatggtatt
gtaataaaagtaaattcatatagtcttcaagaagagattggctatactcaaaaaagtcct
agatgggcaactgcgtttaagtttccagaagaagaattagctacaaaattattagatgta
gaactaagcgtgggacgtactggaattgttacacctgtagcacaactagatcctattgta
atttctggctctactgtatctaaagcatcattacataataaagatgtaatagatgaacta
gatattcatattggagatatggtaatagtaaaaaaagcaggggaaataattccaaaggtt
gttagagtattaaaagaattaagattagaaaattcagagaaatatataatgcctaatcga
tgcccttcttgtaatagtgaacttgtctcaaagaaagatgatccatttattaggtgtgtt
aatcctgaatgtcctgaacaaaatataagaaaaattatccactttgcatcgagagatgct
ttaaatattgaaggattgggtgataaagtagtagctactctttatgaacaaggtattatt
tctcatacaatagatttattttctttagagagagaaaaattaattgatttggataggatg
ggagaaaaatctgtagataatctattgaaagcaatagagaactctaagaatagttcttta
gataaagttatttatgcattaggtattttaaatgttgggaaaaaggctgctaaaatactt
gctgaaaagtatttaaatttaacaactttaatgacggcgactgttgatgaattaattaat
ttaccagatattggtttaattacagcagaatcagttattgacttcttatctaatgaaata
aatattaaatttataaatgatttaatttcaataggtatgaatcctcaatataaagttcaa
aaaattgaagatgataatatatttagtgggaaaacaatagttttaacaggaaaattggtt
gaattaacacgaaatgaagcaaaagagtatctggaaaaattaggtgcaaaagtaacagga
agtgtaacaacaaaaactgatttagtcttagcaggggaaaaggcaggttcaaaattagca
aaggcagaacaattaggtattcaagtaataagtgaagaagagtttatttctatgttagga
gagaagaaagtaaatggataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (14)   
   Pfam (14)   
All databases (32)   

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