KEGG   Geoalkalibacter subterraneus: GSUB_15505
Entry
GSUB_15505        CDS       T03585                                 
Name
(GenBank) tRNA-splicing ligase
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
gsb  Geoalkalibacter subterraneus
Brite
KEGG Orthology (KO) [BR:gsb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gsb03016]
    GSUB_15505
Enzymes [BR:gsb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     GSUB_15505
Transfer RNA biogenesis [BR:gsb03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    GSUB_15505
 Prokaryotic type
   tRNA splicing ligases
    GSUB_15505
SSDB
Motif
Pfam: RtcB NAD_binding_9
Other DBs
NCBI-ProteinID: AJF07674
UniProt: A0A0B5FSP4
Position
3298254..3299699
AA seq 481 aa
MPIKLQQIDPCRWRIPREGKMRVEGLVFADRAMIEVLQKEQALEQVRNVATLPGIVGRSI
AMPDIHWGYGFPIGGVAAFDPEDGGVVSPGGVGYDINCGVRLLRSELEAEEIRPHLKELA
DALFRNVPSGVGSHRRDLSLAPHETRKVLEQGAAWAVKNGFGSAQDLDHIEERGTIAGAD
PEVVSERALERGRNQLGTLGSGNHFLEVQRVDEVLDSEAANALGLFQDQVTVSIHTGSRG
LGYQVCDDHLKMMLRAAAKYGIELPDRQLCCAPLESPEGRQYLAAMAGAANFAFANRQLI
THWVRETFEQVLRTGPSQLRMSLIYDVCHNIAKWETHQVEGRARRLCVHRKGATRAFPPG
HPETPELYREVGQPVLIPGDMGRCSYVLVGTEDAFNETFGSTCHGAGRVLSRHAARKLAR
RRDIPADLAAKGILIRAAGRATMAEEISEAYKDVSEVVEVVRRAGIGRIVARLVPMAVVK
G
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgcccatcaagctccaacagatcgacccctgccgctggcgcatccctcgtgaggggaag
atgcgtgtcgaggggctggtgtttgccgatcgggccatgatcgaggtgctgcagaaagag
caggcgctggagcaggtgcgcaatgtggcgacgctaccgggcattgtcggccgctccatc
gctatgcccgatatccactggggctacggcttccccatcggcggggtggcggcgtttgat
ccggaggatggcggcgtggtgtctccgggaggggtcggctacgatatcaactgcggggtc
cgactgctgcgcagcgagctggaagcggaggagatccgacctcacctcaaggagctggct
gatgccctgttccgcaatgtgccctccggggtcggctctcatcgccgcgacttgagcctg
gcaccgcatgaaacacgcaaggtgttggagcagggtgcggcctgggcggtgaaaaacggt
ttcggttcggcgcaggatctcgatcacatcgaggagcgcggcaccatcgccggcgccgac
ccggaggttgtttccgagcgtgcgctggagcgcggacgcaaccagctcggtacgctgggc
tccggcaatcattttcttgaagtgcagcgggtcgacgaggtgcttgattccgaggctgca
aacgctctggggcttttccaggaccaggtgacggtctccatccacacgggcagccgtggg
ctgggctaccaggtgtgcgacgatcatctcaagatgatgctgcgcgcggcggccaaatac
ggcatcgagctgccggaccgccagctgtgctgcgcgccgctggagagccccgaagggcgg
caatacctggcggcaatggccggcgcggccaactttgcctttgccaaccgccagctcatc
acgcactgggtgcgtgaaaccttcgagcaggtgctgcgcaccgggccgtcacagctgcgc
atgagcctgatctacgatgtgtgccacaacatcgccaagtgggaaacgcatcaggttgag
ggccgggcgcggcgattgtgcgtgcatcgcaagggggctacgcgggcctttccgccggga
caccccgagacgccggaactctaccgcgaggtgggccagccggtgctgatccccggcgat
atggggcgctgctcctacgtgctggtgggcactgaagatgcgttcaacgagacgttcggc
tcgacctgccatggggctgggcgggtgctgtcacgccacgccgccaggaaactggcccgc
agacgcgacatcccggccgatctggctgcaaaggggatcctgatccgcgcggccgggcgc
gccaccatggcggaggaaatctccgaggcgtacaaggatgtctcggaggtggtggaagtg
gtgcgtcgcgccgggatcggccgcattgtggcgcggctggtgccgatggcggtggtgaag
gggtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (32)   

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