KEGG   Glycine soja (wild soybean): 114370556
Entry
114370556         CDS       T06057                                 
Name
(RefSeq) protein CLP1 homolog
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    114370556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gsj03019]
    114370556
Enzymes [BR:gsj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     114370556
Messenger RNA biogenesis [BR:gsj03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     114370556
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N nSTAND3 CbiA SRPRB AAA_22 AAA_29 ATP_bind_1 AAA_24 FtsK_SpoIIIE DUF1611
Other DBs
NCBI-GeneID: 114370556
NCBI-ProteinID: XP_028183741
Position
10:complement(52642365..52646205)
AA seq 432 aa
MAYGGSGSASTIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPR
LKFAVFTWYGATIEMDGATETDYTADETPMVSYVNVHAVLDGRRSRAKASSPDDSVSSQG
PRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDP
VEGIPLEMPLVYFYGHATPSNNVELYKVLVKELAGMIERQFTGNAESRASGMVINTMGWI
EGVGYDLLLHAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVVSRNAKV
RQKARSYRIREYFYGLSNDLSPHSNIANFSDLFVYRVGGGPQAPRSALPIGAEPAADPTR
VVPVNINRDLLHLVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSK
YLIMGSLTWLET
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggcgtatggtggttcgggttcggcatcgacaattaagcaagtcaaattggagagagaa
agcgaactgagaatagaagttggtaacgacgcacctcttcgccttcgactccttaacggc
actgctgagatttttggcaccgagcttccacccgaaatctggctcaatttccctcccaga
ctcaagtttgctgtgtttacttggtatggtgcaaccattgaaatggatggcgctactgaa
actgattatactgcagatgagactccaatggtcagttatgtaaatgtacatgctgtgctg
gatggaagaagaagtcgtgctaaagcttcatcaccagatgattctgtttcttctcagggc
cctagggtcattgttgtaggacctactgattctggaaagagtaccttgtcaaggatgctt
cttagttgggcagctaaacaaggttggaaacctacctttgttgacctggatattggccaa
ggctctataacaattcctggatgcattgccgccactccaatagaaatgcccattgatccc
gtggaaggaattccacttgaaatgcctcttgtttacttttacgggcatgcaactccaagt
aacaatgtagaattgtataaagtgcttgttaaggagcttgcagggatgattgagaggcaa
tttactggaaatgctgaatctcgagcttcagggatggtgataaatactatgggatggata
gagggagtaggctatgatttgctcttgcatgcaattcgtacattcaaggccaatgttgtc
ttggttttgggtcaggaaaaactgtgcagtatgctcaaagatgtgctcaagagtgagccc
aaagtagacgttgttaaacttcagaggtcaggtggagttgtatctaggaatgcaaaagtc
cgtcagaaggccagaagttataggataagggaatacttctatggcctttcaaatgatctt
tctccacattctaatattgcaaattttagtgatttgtttgtttatcgagttggtggtggg
ccacaggcccctcgctcagccttgcccattggagcagaacctgctgcagatccaacaaga
gttgtacctgtaaatataaatcgtgatttgctccatttagtccttgctgtctcatttgcc
aaggaacctgatgagatcatttccagcaatgttgctgggtttatttatgtaaccgacatt
gacattcagagaaagaagataacatatcttgctccgtctgctggagaacttccaagcaaa
tatttgataatgggatccttaacatggcttgaaacatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (23)   

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