KEGG   Glycine soja (wild soybean): 114372542
Entry
114372542         CDS       T06057                                 
Name
(RefSeq) pre-mRNA-processing factor 19-like
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03040  Spliceosome
gsj04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114372542
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    114372542
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gsj03041]
    114372542
   04121 Ubiquitin system [BR:gsj04121]
    114372542
   03400 DNA repair and recombination proteins [BR:gsj03400]
    114372542
Enzymes [BR:gsj01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     114372542
Spliceosome [BR:gsj03041]
 Complex B
  Other components
   Prp19 complex
    114372542
 Complex C
   Prp19-CDC5 complex
    114372542
Ubiquitin system [BR:gsj04121]
 Ubiquitin ligases (E3)
  U-box type E3
   114372542
DNA repair and recombination proteins [BR:gsj03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    114372542
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 NBCH_WD40 U-box PROPPIN PAS_11 WD40_like zf-Nse V_ATPase_I_N
Other DBs
NCBI-GeneID: 114372542
NCBI-ProteinID: XP_028185949
Position
10:37353574..37374515
AA seq 525 aa
MNCSISGEVPEDPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVK
PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSVLAQAERQFPASAPNAITANDPVLSNGKRAAEDEDLAPGAKKIHPGISSSIIS
ELTDCNASLSQQRKKRQIPATLAPVEALEAYTQISSHPFHKTNKQGIISLDILYSKDLIA
TGGIDTNAVIFDRPSGQILATLSGHSKKVTSVKFVAQGESFLTASADKTVRLWQGSDDGN
YNCRHILKDHTAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVYDTSGSSEGYT
SAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDG
VKLWDLRKLKNFRNFAPYDSETPTSSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKT
FPDLSGTGKNTCVKFGSDSKYIAVGSMDRNLRIFGLPGEDAPTES
NT seq 1578 nt   +upstreamnt  +downstreamnt
atgaattgctccatctccggcgaagttccggaagatcccgtcgtgtcccggaactccggt
ctcctcttcgagaagcgtttgattgagcgacacatctcggattatgggaagtgtccaatt
actggagaaccacttactatggatgacattgtaccaatcaagacaggcaagatagtgaaa
cccagacctgttcaggcagctagcatccctggcatgcttggaatgttccaaaatgaatgg
gatggattgatgctatctaattttgcattggagcaacaattgcacacagcaagacaggag
ctgagtcatgctctgtatcagcatgatgccgcttgccgagttattgcaagactaaaaaag
gaacgagatgaagctaggtctgtacttgcacaagcagaaaggcagttccctgcttctgca
ccaaatgccataacagcaaatgaccctgtcctgagcaacgggaaaagagctgctgaggat
gaggatctggctcctggtgcaaagaaaattcatcctggaatatcttctagcataatttcc
gagctaactgattgcaatgcttctctttcccagcagagaaagaagcgacagattcctgca
actttggctcctgttgaagctctagaggcatatacccagatatctagtcacccctttcac
aaaacaaacaaacaagggattatatctcttgatatcctttattctaaggatttaattgca
actggaggtattgatacaaatgctgttatttttgaccgaccatcaggacagatattagct
acgctcagtggtcactctaaaaaggtgaccagtgtaaagtttgtagctcagggtgaatca
ttcttaactgcttcagcagataagacagttcgactatggcaagggtcagatgatggtaac
tacaactgcaggcacatcttaaaggatcatacagctgaggtgcaagctgtcactgtccat
gcaaccaataattactttgtgactgcttcacttgacggctcttggtgcttttatgaactt
tcttcagggacatgtctgactcaggtttatgacacttcaggttcttctgaagggtacact
tctgcagcttttcatcctgatggtcttattcttggaaccggcaccacagaatctcttgtc
aagatttgggacgtaaaaagtcaggcaaatgttgctaggtttgatggacatgctgggcca
gtaactgccatatctttctctgagaatggatacttccttgcgactgctgctcatgatggt
gttaagctttgggatctacgtaaattgaagaacttcaggaattttgctccatatgattca
gaaacaccgacgagctccgtggagtttgatcacagtggatcctacctagcagttgctggc
tctgatataaggatttaccaagttgcaaatgtaaaatctgaatggaactgtatcaaaacc
ttccctgatttatccggaacagggaagaacacgtgtgtaaaatttggttcagattctaaa
tacatagcagtgggatcaatggaccggaatcttcggatattcggcttgcctggcgaagat
gctcctactgagtcataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (24)   

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