KEGG   Glycine soja (wild soybean): 114387636
Entry
114387636         CDS       T06057                                 
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    114387636
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gsj03400]
    114387636
Enzymes [BR:gsj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     114387636
DNA repair and recombination proteins [BR:gsj03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     114387636
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C PTCB-BRCT RNA_ligase DNA_ligase_IV
Other DBs
NCBI-GeneID: 114387636
NCBI-ProteinID: XP_028203643
Position
15:14567808..14587646
AA seq 1171 aa
MTEQTKLSVLCSLFTWTQRSKSAAKKRAKFRKFLDAFCTDHNFFPAVRLLLPNLDRERGS
YGLKESVLATSLIDALGISRDSPDALRLLNWRKGGAATGPTAGNFALVASEVLQRRQGTA
SGGLTIRELNELLDRLASAENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWK
KLHGKDVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSEIIIQNVLVDRCILD
GEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSLIHQTLKERH
EILCKIVRPVKGRLEILVPNAGINSHISSGEPCWSFIAHNVDEVERFFKETIENRDEGIV
LKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERP
SPNTHPKQFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPD
VWVDSPEKSIILSITSDIRTIESEVFSAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVH
SSNGTTQRDTEYGSKQDSKPKRSKSSTRGEKKNLSIVPSHLIQTDVSSIKGGSLIFSNMM
FYFVNVPLSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYS
WVLDCYDQKKLVCLQPKYFLFLSELTKKKLQEEIDEFSDTYYLDLDLGVIKQLLSNIDRS
EDVSTVDHYRKKYCPKDKWSFFYGCSIYFHSAIPSLKSDWHFILQLAVRRLKLEVLMGGG
KVTSNLTCATHLVVLLVPGYQTDFEQIQSSFTSVKRKILRSKRLHIVKSQWLEDCSDSCQ
RLPEDSYSLKPWGIEETTAEDCELELGLEAHQSGDNVEDQNISFSDKGIQQRSSKAASED
SMALVSQEKGGKRKRGRPAGSGIKKVKQPAVKQARRARPQIAKKPAKICEYESSDESDSH
GKRPIEQEIDTRAGSLDFYKKRSEPQETEKRENVQVAEIEKNSEQNKLDKQKDLNDNERE
RMLVPEIEMSDRHNEQNNEVTEKLEISADPLQAMLFDMIPSLATQKVEQPMNRSVREEKL
PETSNAEAEPMTTKKKKVSYKDVASELLKDW
NT seq 3516 nt   +upstreamnt  +downstreamnt
atgacggagcaaaccaagctgagcgtgctctgcagcctcttcacgtggacacagcggagc
aagtctgcggcgaagaagcgcgccaagttccgcaagttcctcgacgccttctgcaccgac
cacaacttcttccccgccgtccgcctccttctcccgaacctcgaccgcgagcgcggctcc
tacggcctcaaggagtccgtcctcgccacctccctcatcgacgccctcggcatctcccgc
gactcccccgacgccctccgcctcctcaattggcgcaagggcggcgccgccaccggcccc
accgccggcaatttcgccctcgttgcctccgaggtgctgcagcgtaggcaggggacggct
tcgggtggattgacgataagggagctgaatgagttgcttgaccggttggcttccgctgaa
aacagggctgagaaaattttggttctttctacccttatccaaaagacaaatgcacaggaa
atgaagtggattatcatgataatcctgaaagatctaaagctgggaattagtgaaaaaagc
atttttcatgaattccatcctgatgcagaagacttgtttaatgttacctgtgacttaaaa
ttagtatgtgaaaagctaagggatcggaatcaacgtcataagcggcaggatattgaagtt
ggaaaagctgtgcgcccccaattagctaagagagttgctaatgcaactgaagcatggaag
aagcttcatgggaaggatgtggttgttgagtgcaaatttgatggtgaccgcattcaaatt
cataaaaatggaactgaaatacatttcttctcaaggaactttatcgatcattctgaatat
gcacatgcgatgtcagaaatcataatacaaaatgttcttgttgataggtgcatccttgat
ggtgaaatgttggtgtgggacacatccttgaaacgttttgctgagtttggctcaaaccag
gaaatagccaaggcagcaagagatggtcttgatagtgatagacagttatgctatgttgca
tttgatatcctttattttggagatactagtttgattcaccaaactttgaaggaacgacat
gagattttgtgtaaaattgtaaggccagtgaagggtcgtttggaaattttggtacctaat
gctggtatcaacagtcatatttcttctggtgaaccttgttggtcatttattgctcataat
gtggatgaagttgagagattttttaaagaaaccattgaaaatagagatgagggaattgtt
ttaaaagaccacagctccaaatgggaacctagtgatcgtagtggaaagtggctaaaattg
aagcctgaatacattcaagctggctctgatctggacgtacttatcattggtggctactat
ggctctggacgacgtggaggagaggttgctcaattcttggttggccttgctgagcgtcca
tccccaaatacgcaccctaagcaatttatctccttttgcagagttggtactggactctct
gatgatgagcttgatgctgtagtgaccaaactaaaaccttacttcagaaagtatgaatat
ccaaagaagaggccaccaagtttttatcaagtaactaatcattcaaaagaaagacctgac
gtgtgggttgatagccctgagaaatcaattattctgtctataaccagtgatattcgaact
atagaatctgaggtattttctgcaccttacagtctcagatttcctaggattgacagggtg
agatatgacaaagcttggtatgaatgccttgatgttcaatcatttatagaactggtacat
tctagcaacggtaccacacagagggatacagaatatggcagcaaacaggacagtaaacca
aaacgatcgaaatcctccactaggggagaaaagaaaaacttgtccattgttccttctcat
ttaattcaaactgatgtttccagcattaaggggggctccttaatattttcaaatatgatg
ttctattttgttaatgtgcctctatctcattctctcgagtccttgcacaaaataattgct
gagaatgggggaactttttcaatgaatttgaataactcagtcacgcattgtgttgcagca
gacagcaaggggtttaaatttgaagcagcaaagcgtcatggtgatatcattcattattct
tgggtattagattgctatgatcaaaagaagcttgtctgcttacagcctaagtacttcctt
tttctatctgaactgacaaagaagaagttacaagaagaaattgatgagttctcagacact
tactacttggaccttgatcttggagtcatcaagcagctcttaagcaatattgataggtca
gaagatgtcagcactgttgatcattataggaaaaaatactgcccaaaggataagtggtct
ttcttttatggatgctccatttatttccactctgcaataccttcattgaaaagtgattgg
cattttatattgcaacttgctgtgaggagattgaagcttgaagttctcatgggtggtgga
aaagttacctctaatcttacttgtgcaacccatttagttgtcttgcttgtgccaggatat
cagactgactttgaacaaatacagagtagtttcacttcagtaaaaagaaaaattctccga
agcaagaggttgcatatagttaaatcccagtggttagaagattgttctgacagttgccaa
agattaccagaagactcctacagtttgaaaccctggggaatagaagagacaactgctgaa
gattgtgaactggagttggggttagaggctcatcagagtggagataatgtagaagaccaa
aatatttctttctccgacaagggaattcaacagaggagttcaaaagctgcaagtgaagac
agtatggctttggtatctcaagagaagggtggcaaaagaaaaagaggaagacctgcaggc
agtggtatcaaaaaagtaaaacaaccagctgtcaaacaagctcgaagagcacgaccacaa
attgcaaaaaagcctgctaaaatatgtgaatatgaatcgtcagatgaaagtgattctcat
ggcaaaagaccaattgagcaggagattgacacgagagcaggaagtcttgatttttacaag
aaacgttcagaaccacaggagactgagaaacgggaaaatgtccaagttgctgagattgag
aaaaattctgaacaaaataagttagacaagcaaaaggacttgaatgacaatgaacgtgaa
agaatgttggttcctgaaatagaaatgtctgataggcacaatgagcaaaacaatgaggtg
actgagaaactagaaatttcagctgaccccctgcaagcaatgttatttgacatgattcct
agccttgccacccaaaaagtcgagcaaccgatgaatcgaagtgttagagaagagaagcta
ccagaaacctccaatgcagaagcagagcctatgactacaaagaaaaagaaagttagctac
aaggatgttgccagtgagctgctgaaggactggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (25)   

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