KEGG   Glycine soja (wild soybean): 114414921
Entry
114414921         CDS       T06057                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    114414921
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gsj03021]
    114414921
   03036 Chromosome and associated proteins [BR:gsj03036]
    114414921
Transcription machinery [BR:gsj03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     114414921
   Coactivators
    SAGA/TFTC/STAGA complex
     114414921
Chromosome and associated proteins [BR:gsj03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     114414921
    STAGA complex
     114414921
    TFTC complex
     114414921
    SAGA complex
     114414921
    SLIK complex
     114414921
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 Ge1_WD40 Nup160 WD40_like Cytochrom_D1 PROPPIN PALB2_WD40 LisH
Other DBs
NCBI-GeneID: 114414921
NCBI-ProteinID: XP_028235173
Position
6:4750965..4758289
AA seq 663 aa
MEDEKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSNTSNSVLEPDIANHLLAFSQLETGP
ARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDH
EMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILG
IINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERLEKAG
ALLSDSEKGEGEAKEGENDETKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEANTIPS
APRVKPELPLPVIPAEAEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDG
SLIAGGFSDSSLKVWDMAKLGQQQTSSLSQGENEQIFGQGGGKRQYTLFQGHSGPVYAAS
FSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTAR
IWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRG
MILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSVIASGS
ADCTVKLWDVNTSTKVSRAEEKGGSANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALS
KSG
NT seq 1992 nt   +upstreamnt  +downstreamnt
atggaggacgagaaaatagttggatacgttacggcgttccttaagaagaaaggcttcacg
caaaccgagaagattttccaggaagaattccaacacaacaagtccaacacttccaattcc
gttctggaacccgacattgccaaccacctcctcgccttctctcaattggagaccggtcct
gctaggttccacgacggctatagcagactgagaacatggacttattcttcactcgatttg
tacaagcacgagttgcttcgcgtgctttatccggtgtttatccactgcttcatggatctt
gtcgccaaaggacatgttcaagaagctcggaacttcttcaatactttccgcgaagaccat
gaaatgatgcacttgcgtgaccttcagaagttggaaggagttctctctcctaatcatctc
gaggaaatggaatttgctcactcgcttagaaagagcaaattcaacataaagatatgtgag
tattcctatgagcttttgttgcaacatctacacagtacgcaatccaccactatacttggt
attatcaatgagcatattaactttcaagtaacccctggtcaacctagcttaatttccgat
gatccggaagctgttacccttactggaagcagccaggaagcagcaaaccagataaatcaa
aaagaaattcattgggggttgcttgaagactctcttgaagaacggctggagaaggccggg
gccttgctttcagactctgaaaagggtgaaggggaagcaaaagagggggagaatgacgag
actaagaaaagatccattgaaggaggaaagcaaggtgcttcagtcaaaaaagtaaaaaag
gacaaaggtggaagtgcaactggaaaaagtgcaaaacctgaagctaacaccataccttca
gctcctcgagttaagccagaactccccttgcccgtaatcccagctgaggcggaacagtcc
gtccttgaggatttaaggaaccgtgtacagcttagcagtgttgcattgccatcagttagc
ttttacacatttatcaatacacataatggtttaagctgttcatcaatatcccatgatgga
tcattgattgctggaggattttctgactcatcactgaaggtttgggatatggcaaagctt
ggacaacaacagaccagttctctttcgcagggtgagaatgaacaaatatttgggcaaggt
ggtgggaaaagacagtatacattgtttcaaggtcattcaggccctgtttatgcagcctct
tttagtcctgtcggagattttatcctttcatcctcagcagactcgacaattcgattatgg
agcacaaaacttaatgccaatcttgtttgttataagggtcacaattaccctgtctgggat
gttcagtttagtcctgtggggcattattttgccagctcgtcacatgacagaactgctagg
atttggtccatggacaggatacagcccttaagaataatggcagggcacttgtctgatgtt
gattgtgtgcaatggcatgccaactgcaactacattgcaactggttccagtgataaaaca
gttcgactatgggatgtgcagagtggtgagtgtgtccgggttttcgttggccacaggggt
atgattttgtctttggcaatgtctcctgatggtcgctatatggcatctggcgatgaagat
ggcacaatcatgatgtgggacctctctagtggccgctgtctcacacctttgattgggcac
acatcatgtgtctggtccctcgctttcagttctgaaggttctgtgatagcatctggatct
gctgattgcactgtaaaattgtgggatgtaaatacgagcaccaaggtttctagggctgaa
gaaaaaggtgggagtgctaacagacttagatcgctgaaaactctaccaaccaaatctact
ccagtttactcattgcggttttctcgaaggaatcttctttttgcggctggtgctctatca
aaaagtggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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