KEGG   Galdieria sulphuraria: Gasu_49590
Entry
Gasu_49590        CDS       T02926                                 
Name
(RefSeq) DNA-directed RNA polymerase subunit
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
gsl  Galdieria sulphuraria
Pathway
gsl03020  RNA polymerase
gsl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gsl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Gasu_49590
  09124 Replication and repair
   03420 Nucleotide excision repair
    Gasu_49590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gsl03021]
    Gasu_49590
   03400 DNA repair and recombination proteins [BR:gsl03400]
    Gasu_49590
Enzymes [BR:gsl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Gasu_49590
Transcription machinery [BR:gsl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     Gasu_49590
DNA repair and recombination proteins [BR:gsl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Gasu_49590
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 RNA_POL_M_15KD
Other DBs
NCBI-GeneID: 17086413
NCBI-ProteinID: XP_005704030
UniProt: M2WUB3
Position
Unknown
AA seq 1184 aa
MDDEEITQEDAWTVISSYFEEKGLVRQQLDSFDEFVTNTMQEIVDSQPDLVLTAEPQYLP
GQRSEDLDKRYVVSFGQLSLSKPTFTEDTGETRPLYPNQARLRNLTYSSALYCDVTVTEV
NLESGKEETSQHPPIRVFLGRIPIMLKSQFCHLYNLEPWDLAELGECPYDQGGYFVINGS
EKVIIAQERMTSNHVFVFKRSQPSKYSYVAECRSAPDSGNRPPSLLQVKLLRGGAKGISG
QYIRVSMPYIKQDIPVIIVFRALGFENDREIMSHICYNFQDEELMTFLMPSIEEAAVIQD
HLVALDYIGKRGNTIAVTKDKRIQYAREVLQKEFLPHIGIGEGCELKKGYFLGYVINRLL
STALGRREVDDRDHYGNKRLDLAGPLLGEMFRHHLRRVLKETRSILQRNLDTGKGLNLQG
AVKSRTITNGLKNALATGNWIRGRTGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR
QLHNTHWGMICPAETPEGQACGLTKNLALMAYISVGTPSAPVIEFLEEWSMENLLEISPS
VVPLATKVFVNGAWVGIHREPEDLVRTLKELRRQGTIKEEVSIVMDHQFKELRIYTDPGR
VCRPLFIVNPPPPPISFEDANEDTNVFGQRPPQTLAIKKSHIDMLKRTDGDRCSFSFLVE
NGLIEYVDVNEEETTMIAMNIKDLIETDSEVVYTHCEIHPSMILGVCGSIIPFPDHNQSP
RNTYQAAMGKQAMGIYATNYQLRMDTMAHVLYYPQKPLVTTRAMEHLQFRSLPAGINAIV
AIACYSGFNQEDSVILSQSAVDRGLFRSLFFRTFRDEERRRLGGAQETFEVPNPKECIGT
KRGAYDKLEEDGLVAEGTRVSGDDILVGKTCPLGRMAANGEEDETWKAYSQTLGGKTKKD
ASTSMRSTETGVVDKVMLAANEAGARFVKVRIRSVRVPQVGDKFSSRHGQKGTVGITYGQ
EDLPFNVDGIVPDIIINPHAIPSRMTIGQLIECLQGKVSAIAGREGDATPFTWVTVDEIS
QQLKTLGYQSRGWELMYNGFTGRPLEAHIFIGPTYYQRLKHMVDDKIHSRARGPVQILTR
QPVEGRAREGGLRFGEMERDCMISHGAAFFLKERLMDESDAYRIHVCNLCGLIAIADLKR
NTFECRSCRNKTEISQVFIPYACKLLFQELMAMGIAPRIVTADE
NT seq 3555 nt   +upstreamnt  +downstreamnt
atggatgatgaagagatcactcaggaagatgcttggactgtaatttcttcatactttgaa
gaaaagggtctcgtgagacaacaactagactcttttgatgagtttgttactaataccatg
caagaaattgtggactctcaaccagacctcgtgttaactgctgagccgcaatatttacct
ggtcaacgttcggaagacttggataaacgatatgtggtatcttttggacagttgagtttg
tcaaaaccaacttttacagaagacacaggtgaaacgagacctttatatcctaatcaagca
agacttcgaaaccttacctatagttccgctttatattgtgacgttactgtaactgaagtc
aatttagaaagtggcaaagaagaaacttcacaacatccccctattcgagttttcttggga
agaattcctattatgctcaagtcacagttttgtcacttgtataatttagagccttgggac
ttggcagaattgggagagtgtccatatgatcaaggaggttattttgtgattaatggaagc
gaaaaagtgattattgcacaggaaaggatgacttctaaccatgtttttgtatttaagcgc
tcgcaaccttcgaaatattcttacgtagcagagtgtcgttcagctccagattctggaaat
aggccaccttctttgctccaagttaaacttcttagaggtggagcaaagggtatttctggt
caatatattcgagtatcgatgccatatatcaaacaagatattcccgttattatcgttttt
cgtgccttgggatttgagaatgatcgagaaataatgagtcatatttgttataactttcaa
gatgaagaactcatgacatttttaatgccttcgattgaggaggctgcagtaattcaggat
catttagttgctttagactatatcgggaagagaggaaatactattgctgtgactaaagac
aagaggatacaatatgctcgggaagttttacaaaaggagtttttgccacatattggaatt
ggcgaaggctgtgaattgaaaaaaggatacttcttgggttacgtaattaatcgtttgctt
tccactgcacttggcagaagagaagtagatgatagggatcattatggaaacaaacgtttg
gatctagctggacctctattaggagaaatgtttcgtcatcatttgagaagagtattgaag
gaaaccagaagtattcttcaacgcaatcttgatactggaaaaggtttaaaccttcaagga
gcagtcaagtctcgtaccataacgaatggcttaaagaatgctttggctactggtaattgg
atacgtggaagaacgggtgtctctcaagttttaaatcggctcacttatgcttcaactctt
tcacatttacgtagactaaactcacccattggtcgtgagggtaaacttgcgaaaccacga
caattacataatactcattggggaatgatttgtccagctgaaacacccgaaggtcaagca
tgtggtttgaccaaaaatttggcattgatggcttatatttctgtcggtactccttctgcg
ccagtgattgaattcttagaagaatggagtatggaaaatttgttggaaatatctccttca
gtagttccactggctacaaaggtttttgtcaatggtgcttgggttggtattcatcgtgaa
ccagaggaccttgttcgaacattgaaagaacttcgtcgacaaggaacgatcaaggaagaa
gtgagtatcgtcatggaccatcagttcaaggagcttcgaatatatacggatcctggtcgt
gtttgtcgacccttatttattgtcaatccaccaccccctcccatatcttttgaagatgct
aatgaagatactaatgtatttggtcaacgtccaccacaaactttagccattaagaagtca
catattgacatgttgaaaaggacagacggagatcgttgtagtttttctttcctagtagag
aatggtcttatagagtatgtcgatgtaaacgaagaagagacaactatgattgcgatgaat
ataaaagatttgattgaaaccgactctgaagtagtttatacacattgtgaaattcatcca
tcgatgatattaggcgtttgtggttccattattccatttcctgatcataatcaaagtccg
cggaatacttatcaagcagccatgggaaaacaagcaatgggtatttatgcaaccaattat
cagttacgaatggatacaatggcacacgtgttatattatccacaaaagccattagttact
acacgtgcaatggaacatttacagtttcgttcgcttcccgcaggtatcaatgccattgtg
gcaattgcatgttactctggatttaatcaagaagattccgttattttgagtcaaagtgct
gttgatcgaggtttatttcgttcgttgtttttccgaacgtttcgtgatgaagagcgtcga
agactaggaggtgctcaagaaacctttgaagttcccaatccaaaggaatgtattggaacc
aaacgaggtgcatatgacaagttggaagaagatggtttggtagcagaagggactcgagta
tcaggagatgatattttggtgggtaagacatgcccacttggaagaatggcagccaatgga
gaagaagatgaaacgtggaaggcgtattctcagacattaggaggcaaaaccaaaaaggat
gcatctaccagtatgcgaagtactgaaacgggtgtagtagataaagtcatgttggctgcc
aatgaagcaggcgctcgttttgttaaagtccgcattcgttcggttcgtgtaccacaagtt
ggagataaattttccagtcgtcatggccagaaaggaactgtgggtattacttatggtcaa
gaagatttaccttttaatgtggatggtattgttcctgacattattatcaatccacatgct
attccaagtcggatgacaataggtcagttgattgagtgtcttcaaggaaaagtttctgcc
attgctggaagagaaggagatgcaactccctttacttgggttactgtggatgaaatatct
caacagttgaaaacattgggttatcagagtcgtggatgggaactgatgtacaatggtttt
acaggtcgacctttggaagcacatatatttattggtcctacttattaccaacgactcaag
catatggttgacgataaaatacattcacgtgctcgtggtcctgttcaaatacttacgaga
caaccagtcgaaggaagagctagagaaggtggactccgttttggagaaatggaaagagat
tgtatgatttctcatggagcagcgttctttttgaaagagcgtttgatggatgaatcggat
gcttatcgaatccatgtttgcaatctttgcggactgatagctatcgctgatttgaagagg
aatacttttgaatgtcgcagttgtcgtaacaaaacggaaatatctcaagtattcattcct
tatgcctgtaaactgctgtttcaggaacttatggcgatgggtattgcaccaagaattgta
actgcagatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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