KEGG   Gordonia terrae: BCM27_06105
Entry
BCM27_06105       CDS       T04440                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
gta  Gordonia terrae
Pathway
gta03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gta00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BCM27_06105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gta03021]
    BCM27_06105
   03400 DNA repair and recombination proteins [BR:gta03400]
    BCM27_06105
Enzymes [BR:gta01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BCM27_06105
Transcription machinery [BR:gta03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BCM27_06105
DNA repair and recombination proteins [BR:gta03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BCM27_06105
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: ANY22438
UniProt: A0A4U9Z3A8
Position
1340766..1344722
AA seq 1318 aa
MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLNERQQKLEQD
LAELEAEGAKADVRRKVRDGAEREMRRMRDAAQRELDGLEEIWDKFVKLSLGDLIIDEKL
YRQLEERYGEYFQGSMGAEAIKKLLETFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLKEGAAGEYT
AANGDDVERGVYSTPAEAIMAVDRGVLTVQSRIKVRLTDQRPPADIEAEQFPDGWKYGSP
WELETTLGRVLFNELLPIEYPFVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSMADVLVPPQKAEILDKYEERADGLERKFQRGALTPDERRDSLVEIWKQA
TEEVGAAMEAHYPDDNPIPMIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGITTTI
AEKQADGTLIRDAHVETSTYARTLAQDAVDTDGNVIVERGHDLGDPAIEALLAAGITQVK
VRSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVQELFEARVPKGVAPIAEVSGRVRLEDDDRFYKITLIPDDGSEEVVIDKIS
KRQRLRVFKHDDGSERLLADGDHVEVGQQLMEGSANPHEVLRVMGPRQVQIHLVNEVQEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDHGSTEFLPGSLVERAEFEAANRQVVTEGGEPA
AGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPAG
TGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSNDYR
NT seq 3957 nt   +upstreamnt  +downstreamnt
gtgctcgacgtcaactttttcgacgaactgaagatcggtctggcgacagccgacgacatc
cacaactggtcatacggtgaggtcaagaagccggagacgatcaactaccgcacgctcaag
ccggagaaggacggcctgttctgcgagaagatcttcggcccgacccgtgactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgaccaaggccaaggtgcgccgcgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctatgtcatcaccgcggtcgac
gacgagctccgccacaacgagctctcgacgctcgaggcggagatggaggtcgagaagaag
gccgtcgccgatcagcgcgacgccgacctgaacgagcgtcagcagaagctcgagcaggac
ctcgccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgacggc
gccgagcgcgagatgcgtcgtatgcgcgacgccgctcagcgtgagctcgacggtctcgag
gagatctgggacaagttcgtcaagctcagcctgggcgatctcatcatcgacgagaagctc
taccgtcagctcgaagagcgctacggcgagtacttccagggttcgatgggcgccgaggcg
atcaagaagctgctcgagaccttcgacatcgacgccgaggccgagtcgctgcgcgagacc
atccgtagcggcaagggccagaagaagctgcgtgcgctcaagcgactcaaggtcgtcgcg
gcgttccagcagtcgggcaactcgccgctgggcatggtcctcgacgccgtgccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtcatcaaccgcaacaaccgcctcaagcgtctgatcgatctc
ggtgcgcccgagatcatcgtgaacaacgagaagcggatgctgcaggagtcggtcgacgca
ctcttcgacaacggtcgtcgcggccgtccggtcaccggaccgggcaaccgcccgctcaag
tcgctgagcgatctactcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggctctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccaggcgcagaacatcaagtccgccaagcgcatggtcgagcgtcagcgc
cccgcggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcaccgacgctgcaccgcctcggtatccaggccttcgagccgcagctggtcgagggcaag
gccattcagctccacccgctggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtcggcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacattctgtcgccggcgtcgggccgtccgctcgccatgccgcgtctggac
atggtgaccggcctgtactacctgaccaccctcaaggagggcgcggcgggcgagtacacc
gcggcgaacggcgacgacgtcgagcgtggcgtctactcgaccccggccgaggccatcatg
gccgtcgaccgcggcgtgctgaccgtgcagtcgcgcatcaaggtgcgcctgaccgaccag
cgtccgccggccgacatcgaggccgagcagttccccgacggctggaagtacggttcgccg
tgggagctggagaccacgctgggtcgggtgctcttcaacgagctcctgccgatcgagtac
ccgttcgtcaacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgatctcgcc
gagcgttacccgatgatcgtggtcgcccagaccgtcgacaagctgaaggacgtcggcttc
tactgggccacccgttcgggtgtcaccgtctcgatggccgacgtgctcgtgccgccgcag
aaggcggagatcctcgacaagtacgaggagcgggccgacggtctggagcgcaagttccag
cgtggtgccctcaccccggacgagcgtcgtgactccctcgtcgagatctggaagcaggcg
accgaagaggtcggtgcggccatggaggcgcactacccggacgacaacccgatcccgatg
atcgtgaagtcgggtgcggcgggcaacatgacccagatccgctcgctggcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggtctgaccgtcgccgagtacttcatcaacacgcacggcgcccgtaagggtctggcc
gacaccgcgcttcgtaccgccgactcgggctacctgacccgtcgtctggtggacgtctcg
caggacgtcatcgtgcgtgagaccgactgtggcaccgagcgtggcatcaccacgacgatc
gccgagaagcaggccgacggcacgctcatccgcgatgcgcacgtcgagacctcgacctac
gcccgcacgctggcgcaggacgcggtcgacaccgacggcaacgtcatcgtcgagcgtggt
cacgatctgggcgatccggccatcgaggcactgctggccgcgggcatcacgcaggtcaag
gtccgttcggtcctgacctgtgggaccggcaccggtgtgtgcgcgatgtgctacggccgt
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggtatcatcgcggcccag
tcgatcggtgagcccggtacccagctgacgatgcgtacgttccaccagggtggcgtcggt
gacgacatcaccggtggtctgccgcgtgtccaggagctcttcgaggcccgcgtccccaag
ggcgtcgcgccgatcgcggaggtctccggccgggtgcgcctcgaggacgacgaccgcttc
tacaagatcaccctcatcccggacgacggttcggaagaggttgtcatcgacaagatctcg
aagcgtcagcgtctgcgcgtgttcaagcacgacgacggttccgagcggctcctcgccgac
ggtgaccacgtcgaggtcggccagcagctcatggagggctcggccaacccgcacgaggtg
ctccgcgtcatgggtccccgtcaggtgcagatccacctggtcaacgaggtccaggaggtc
taccgcagccagggtgtgtcgatccacgacaagcacatcgagaccatcgtgcgtcagatg
ctgcgtcgcgtgacgatcatcgaccacggttcgaccgagttcctgcccggttcgctcgtc
gagcgcgccgagttcgaggcggccaaccgtcaggtcgtgaccgagggcggcgagcccgcc
gccggacgtccggtgctgatgggtatcaccaaggcctcgctggcgaccgagtcgtggctg
tcggcggcgtcgttccaggagaccacgcgtgtcctgaccgacgcggcgatcaacagccgc
agcgacaagctgatcggtctgaaggagaacgtgatcatcggtaagttgatcccggccggt
accggtatcaaccgctaccgcaacatccaggttcagccgaccgaagaggcacgcgccgcg
gcgtacgcggtgccgtcctacgacgacacctactacagcccggacggcaccttcggtgct
ccggccggcgctgcggtgccgctggacgactacggattctccaacgactaccggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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