KEGG   Parageobacillus thermoglucosidasius C56-YS93: Geoth_0122
Entry
Geoth_0122        CDS       T01531                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
gth  Parageobacillus thermoglucosidasius C56-YS93
Pathway
gth03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gth00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Geoth_0122
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gth03021]
    Geoth_0122
   03400 DNA repair and recombination proteins [BR:gth03400]
    Geoth_0122
Enzymes [BR:gth01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Geoth_0122
Transcription machinery [BR:gth03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Geoth_0122
DNA repair and recombination proteins [BR:gth03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Geoth_0122
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AEH46182
Position
120450..124022
AA seq 1190 aa
MTGRLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYKWFLDEGLREMFREISPIEDFSG
NLSLEFIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYYSEKVDKNGKRGFSATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYLRNTLEKDNTDSTEKALIEIYERL
RPGEPPTIENAKNLLISRFFDPKRYDLASVGRYKINKKLHIKNRLFNQRLAETLVDPETG
EVIAEKGTIVDRRTLNRILPYLENGVGLRVHKPFGGVVEEEIALQSIKIYAPNDPDGEQV
INVISNGYIAEDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKF
GFIETPYRRVDPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGEN
IVVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGT
GMEYVSARDSGAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQ
GTCYNQRPIVKKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSER
LVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGD
LLVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGDE
LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPL
GVPSRMNIGQVFELHLGMAAKKLGLHIASPVFDGATEEDVWNILEEAGMPRDAKTVLYDG
RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQSLGM
DVTILTSDEKEINMENFDEEDDVHSADSLVPEVKSAEDEKAGKKGVATKE
NT seq 3573 nt   +upstreamnt  +downstreamnt
ttgacaggccgactagttcaatatggacgacaccgccaacgaagaagttacgcgcgtatc
agtgaagtgctggaattgccaaatcttattgagattcaaacttcctcttataaatggttt
cttgacgaaggattgcgggaaatgttcagagaaatttccccgattgaggacttttccggc
aatctttctcttgagtttatcgattatagtttaggggagccaaaatatactgttgaagag
gcgaaagaacgcgatgttacatatgccgcgccgcttcgtgttaaagtgcgtttaattaac
aaagaaactggcgaagtaaaagaacaagatgtctttatgggcgatttcccgttaatgaca
gaaacgggaacgtttatcattaacggggcggaacgtgttattgtttcccagcttgtccgc
tcaccaagcgtttattatagcgaaaaggttgataaaaatggaaaacgcggtttttcggca
acggtcattccgaaccgcggggcatggctggaatatgaaacagatgcaaaagatgttgtg
tatgtccgtattgaccgcactcgtaaactaccagtgacggttcttctgcgcgctcttggc
tttggctctgaccaagaaattatcgatttaatcggtgataacgaatatcttcgcaacacg
ctcgaaaaggataatacagacagcacggaaaaagcgttaatcgagatttacgagcgtttg
cgtccaggggaaccgccgacgattgaaaatgcaaagaatttgttaatctcccgcttcttt
gatccaaagcgttatgacttggcaagcgtcggacgttataaaattaataaaaagctccat
attaaaaaccgtctgtttaaccaacgccttgccgaaacattggtggatcctgaaactggc
gaagtcattgcagaaaaaggaacgattgttgatcggagaacgttaaatcgaattttacca
taccttgaaaacggtgttggattgcgggttcacaaacctttcggcggcgtagtggaagaa
gaaattgcgctgcagtcgattaaaatttatgcgccaaacgacccggacggggaacaagtg
attaatgtcattagcaacggctacattgccgaagacgtaaaacatattactcctgcggat
attattgcttcgattagctatttctttaatttattgcatggagtcggtgacacggatgat
attgaccatttaggaaaccgtcgtctccgttctgtcggtgaattgttgcaaaaccaattc
cggatcggtttgtcgcgcatggagcgggttgttcgtgagcgcatgtcgattcaggacaca
aacacgatcactccgcaacagctgatcaatattcgtccggtcattgcggcgattaaagaa
tttttcggaagctcgcagctttcgcaatttatggatcaaacgaacccgctcgctgaattg
acgcataaacgccgcctgtctgccctaggtcctggtggcttgactcgtgaacgggccggt
tttgaagtgcgtgacgtccactattcacattatgggcggatgtgtccaattgaaacgcct
gaaggtccgaacatcgggttaattaactcattgtctacgtatgcgaaagtgaataaattc
ggttttatcgaaacaccgtaccgccgcgtcgatccagagacgggaagagttaccgatcaa
attgactatttaaccgctgacgaggaagataactacgtcgtggcgcaagcgaacgttccg
ctcgcagaagatggaacgttcttagaagaaaatgtggttgcccgtttccgcggcgaaaac
attgtcgtcaaacgcgaccgcgttgactatatggacgtatcgccaaagcaagtcgtatcg
gcagcgacggcctgcattccgtttttggaaaacgatgactcgaaccgcgcgctgatgggt
gcgaacatgcagcgtcaagccgttccgctgttagaaccggaagcgccgattgtcggcacg
ggaatggaatacgtgtccgcgagagattccggcgccgctgttatctgtaaacatcgaggc
attgtcgaacgggtagaggcgaaagaaatttgggttcgccgtctcattgaagtggacgga
aaagaagtgaaaggtgatcttgataaatatcgcctgttgaaattcgtccgctccaaccaa
ggaacttgctacaatcaacgtccgattgtgaaaaagggcgatatcgtagaaaaaggcgag
attttggcggacggaccgtccatggataaaggcgagcttgcccttggccgcaacgtgctt
gttgcctttatgacatgggatggctacaactatgaagacgcgattatcatgagcgaacgt
ctcgttaaagaagacgtctatacgtccattcatattgaagagtatgaagcggaatcccgc
gacacaaaacttggtccggaagaaattacgcgcgacattccgaacgtcggcgaggatgcg
ctgaaaaacttagatgagcgcggaatcgtccgcattggcgccgaggtaaaagacggcgac
ttgcttgttggaaaagtaacgccaaaaggaatgacagaactgacggcagaagagcggctg
ctgcatgcgatcttcggtgagaaagcccgcgaagtgcgcgatacgtctcttcgcgttccg
catggcggcggcggcatagtccttgacgtgaaggtctttaaccgtgaagacggagatgaa
cttccgccaggcgtcaaccagcttgtccgtgtttatatcgtacaaaagcggaaaatttcc
gaaggcgataaaatggcaggacgccatggaaacaaaggggttatttcgcggattttgccg
gaggaagatatgccgttcttgccagatggcacgccaattgatattatgttgaatccttta
ggcgttccatcgcggatgaatatcgggcaagtgtttgagctgcatctcggtatggcggcg
aaaaagctcggtcttcatattgcgtccccggtattcgatggggctacagaagaagatgta
tggaacattttagaagaagctggaatgccgcgtgacgcaaaaacggtgttatatgatggc
agaacgggagaaccgtttgataaccgtgtatctgtcggtattatgtacatgattaagctt
gcgcacatggtcgacgataagctgcacgcccgctcaacaggaccgtactcgctcgttacg
caacagccgctcggcggtaaagcgcaatttggtggacagcgctttggcgaaatggaagtg
tgggcgcttgaagcttatggtgctgcgtatacattgcaagaaatacttacagtcaagtcg
gacgatgtcgtcggccgtgtcaaaacgtacgaagcgattgtaaaaggggaaaacattcca
gaaccaggtgtgccggaatcgtttaaagtgctgataaaagagctgcaaagcttaggtatg
gatgtcaccattttgactagcgatgagaaagaaattaatatggaaaactttgatgaagag
gatgacgttcattctgcggattcgcttgtcccggaagtaaagtcggcagaagatgaaaaa
gccgggaaaaaaggtgttgcgacaaaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (56)   

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