KEGG   Gloeophyllum trabeum: GLOTRDRAFT_111016
Entry
GLOTRDRAFT_111016 CDS       T03130                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
gtr  Gloeophyllum trabeum
Pathway
gtr03018  RNA degradation
gtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GLOTRDRAFT_111016
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GLOTRDRAFT_111016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gtr03019]
    GLOTRDRAFT_111016
   03041 Spliceosome [BR:gtr03041]
    GLOTRDRAFT_111016
Messenger RNA biogenesis [BR:gtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GLOTRDRAFT_111016
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     GLOTRDRAFT_111016
Spliceosome [BR:gtr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    GLOTRDRAFT_111016
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 19299319
NCBI-ProteinID: XP_007865861
JGI: Glotr1_1_111016
UniProt: S7RMY9
Position
Unknown
AA seq 123 aa
MADRGRGAARGARGSSASARGRGGPQGPQPTMDKPKREAILDLSKYVNERIRVKFTGGRE
VTGVLKGFDQLLNLVLDEVEEQPTEPSPRKRNLGLVVLRGPTITLLSPVDGFEEIANPFV
AQE
NT seq 372 nt   +upstreamnt  +downstreamnt
atggcggatcggggccgtggtgctgctaggggtgcaagaggatcatctgcgtctgctaga
ggtcgaggaggtccacagggaccgcagcccaccatggacaaaccgaagcgtgaagctatt
cttgatctttcgaagtatgttaacgaaagaattagggtgaagttcaccggcggtagggaa
gttacgggagtgctcaaaggatttgaccaactgcttaaccttgtacttgacgaagttgaa
gaacaaccgacagagccttcaccgcgcaagagaaatctggggctggtcgtactccgcggc
cccacgataactctcttgagccctgtagacggcttcgaagaaatagccaaccccttcgtg
gctcaagagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

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