KEGG   Gardnerella vaginalis 409-05: HMPREF0424_0613
Entry
HMPREF0424_0613   CDS       T01146                                 
Name
(GenBank) cobalt ABC transporter, ATP-binding protein
  KO
K01552  energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
Organism
gva  Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:gva00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:gva02000]
    HMPREF0424_0613
Transporters [BR:gva02000]
 ABC transporters, prokaryotic type
  Metallic cation, iron-siderophore and vitamin B12 transporters
   Energy-coupling factor transporter
    HMPREF0424_0613
SSDB
Motif
Pfam: ABC_tran AAA_21 SMC_N AAA_16 AAA_23 Mg_chelatase NB-ARC AAA_15 AAA_22 AAA_29 nSTAND3 AAA_13 Zeta_toxin AAA_18 AAA_30 AAA_5 TsaE NTPase_1 TniB AAA_24 AAA_33 DO-GTPase2 SRP54 PhoH nSTAND1
Other DBs
NCBI-ProteinID: ADB13599
Position
677118..679001
AA seq 627 aa
MPLLELKDVSFKYVNRNKDDSLDSSKAQDSTFALKDVSLSVESGEFVGIIGPSGSGKTTL
ASLFSGAIPHHYSGELLGSVKIAGQDTNNLALTNIACLVGSVIQDIDAQMVAANVEDEIL
FGLENFGVAHSEIPSRIDEALQIVGISDLRNRDLDTLSGGQKQKVAIAAILALKPKVMVL
DEPTCALDPVSSKMIFSILKDLNKNFGITVVVIEQKVALLSEYCKRLVVLSNGILSLDLP
VSQALKNMDLLYSIGINYPRTTHLVNDLQRENICSKSDLPVSVEDTVNTIVNTINSEKSL
TSHVDSHSEFDNRECDSNKSALACDFSHESQVSTQSYAQNKSKNDSPCLSLKNVSFLYQS
GVSALKNVSFEAYAGELVTLVGRNGAGKTTITKIINGLLKPTEGNVTIDGVDTKSLRISQ
IAKYVSTLFQNPDRQLCKETVLEEVTLSCILIGQNEDEAKAHAMEIIDELELDSEASPFM
LSRGQRQMVALAATVVTNPKILLLDEPTCGLDYKECMRIMQVVERLRKNGCCVIMVCHDM
EVVLDYATRLITINDGKLIIDGSAYDVFEKPEVCSAAALYPPLLCSVSQGLVAHGFNKCN
GLYVREELVEALRGEKITKQTVQNQQN
NT seq 1884 nt   +upstreamnt  +downstreamnt
gtgcctttgcttgagttaaaagatgtgtcttttaagtatgtgaatcggaataaagatgat
tctttagactcttcaaaggcacaagattccacttttgcactaaaagatgtaagtcttagc
gtagaatctggcgaatttgtgggaattattggtccttctggctctggaaaaacaactctt
gcttcgcttttttctggcgcgattccgcatcattattctggcgaacttttaggaagcgtt
aagattgcgggtcaagacactaacaatcttgctttaactaacattgcttgcttggttgga
tctgttattcaagatattgatgcgcaaatggttgccgcaaatgttgaagatgagattctt
tttggcttagaaaattttggcgttgcgcatagcgaaataccaagtcgaatagatgaagct
ttgcaaattgttggcattagtgatttgcgtaaccgtgatttagacactttgtctggaggt
caaaagcagaaggttgcaattgctgctattcttgcgctaaagcctaaagttatggtgtta
gatgagccgacgtgcgctttagatcctgtttcttctaaaatgattttttcgattcttaaa
gatttgaataagaattttggaataacggttgttgtaattgagcaaaaagttgcgctttta
agcgagtattgcaagcgtttagttgtgctttctaatggcattttgtcgcttgatttgcct
gttagccaagcgttgaaaaatatggatttgctttattctattggaataaattatccgcgt
actacgcatttggttaatgatttacagcgtgagaatatttgctctaaaagcgatttgcct
gtgtctgtagaagatacagtaaatactattgttaatacgattaatagtgaaaaatctttg
acttcacatgttgattcacatagtgaatttgataatcgtgaatgcgattcaaataaatcg
gcgcttgcttgcgacttttcacacgaatcgcaagtctctacacaatcttacgcacaaaat
aaatcgaaaaacgattcaccatgtctttcgcttaaaaacgtcagttttttgtatcaaagt
ggcgttagtgcgctaaaaaacgtgtcttttgaagcttacgctggagagctcgtaactctt
gttggtagaaatggtgctggcaaaacaactattaccaaaattattaatggtttattaaaa
ccaacagaaggcaacgtaacaattgatggcgttgacactaagtctcttcgtattagtcaa
atagcaaaatatgtatctaccttattccaaaatcctgaccgacaattgtgcaaagaaacg
gtacttgaagaagttactttaagctgtattttgattggtcagaatgaggacgaagctaaa
gctcacgcaatggaaattattgatgagttggagctggattctgaagctagcccgtttatg
ctctctcgtggccagcgtcaaatggttgctttagctgcgacagttgtaacaaatcctaag
attcttcttcttgacgagccaacttgcggtcttgattacaaggaatgcatgagaattatg
caagttgtagagcgtttaagaaaaaacggttgctgcgtgattatggtttgtcacgatatg
gaagttgtgcttgattatgcaactcgacttataacaattaatgatggaaagcttattatt
gatggttcagcgtacgatgtgtttgaaaaaccggaagtgtgctctgctgcagcattgtat
ccaccattattgtgttccgtttctcaaggcttggttgcgcatggatttaataagtgcaat
ggcttgtatgtgcgcgaagaattagtagaagcgttgcgcggcgaaaaaatcacaaaacag
actgtacagaatcagcagaattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (25)   
   Pfam (25)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system