KEGG   Gardnerella vaginalis 409-05: HMPREF0424_1168
Entry
HMPREF0424_1168   CDS       T01146                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
gva  Gardnerella vaginalis 409-05
Pathway
gva03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gva00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HMPREF0424_1168 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gva03021]
    HMPREF0424_1168 (rpoC)
   03400 DNA repair and recombination proteins [BR:gva03400]
    HMPREF0424_1168 (rpoC)
Enzymes [BR:gva01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HMPREF0424_1168 (rpoC)
Transcription machinery [BR:gva03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HMPREF0424_1168 (rpoC)
DNA repair and recombination proteins [BR:gva03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HMPREF0424_1168 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Ac81
Other DBs
NCBI-ProteinID: ADB13724
Position
complement(1364510..1368529)
AA seq 1339 aa
MLDVNAFDKLRIGLATAEDIRSWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQDEFDTEIGNLRKRRDNEIEARAKKVEED
LHELEESGESKGAAKSKLRASAEREMSAIRTRYDEQIQRLNAVFDRFKGLRAGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLKSAAEELRAEIDNGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDQGFAQNMKSAKRLVDRG
DSEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARTLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVIDEAKGQG
RIFSSLAEAEMALDKHEIDMQAKVLIRVPADFVLPKNWEPAELKVVDPEPGSPDVVREER
FKDGTVLFATSCGRILFNGTLPFDYPFVNEQVPKGVLSKIVDEIATRYSTAQVAATLDAL
KDLGFTRAPWSGVTMAFSDIVLPPNREQIAQDYEDQAAKINSQYDMGLLTDEERRQELIN
LWTECTDKVADAMRENFHDDNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQEVIVREEDCGTKRG
LMMKIADHDENGNLTLVKAADGGPYSRLLAADVIDPADGTTVLAKCGDALSMDVLRDLVA
HGVEEVKARSVLTCESKRGVCAKCYGWSLATSRLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDHGRQVTLTPDDTT
VEPIVYPVTRRAPMLVKDGEHVDVGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHNVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDQAKFREANLAAVKNGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKEDDLKGLKENVIIGKLIPAGTG
LARYRNANVEPDPQVRDSIYPNFGLGGADSTPSNFGESDMGDVDFSNIDFGDMKLGDDFN
PDDFLDDQGGQSDYGDEAE
NT seq 4020 nt   +upstreamnt  +downstreamnt
gtgctggacgtcaacgcatttgacaaactgaggattggactggccaccgccgaagatatc
cgtagctggagccacggcgaagtaaagaagccagaaaccattaattaccgtaccctaaag
ccagagaaggacggtctgttcggtgagcagatcttcggtccaactcgcgattgggagtgc
gcgtgtggtaagtataagcgcgtgcgctttaagggaatcgtgtgcgagcgatgcggcgtg
gaagttacccgcagccgcgttcgccgcgaacgcatgggtcatattgagcttgcagctccg
gtaacgcacatttggttcttcaagggtgtgccaagccgtttgggctacttgctcgacatt
gcacctaaggatcttgaaaaagtaatctacttcgcagcctacatggttacgaaagtcgac
gaagaacagcgtcatcaagatcttccagatttgcaagacgaattcgataccgaaatcggc
aaccttcgcaagcgccgcgataacgaaattgaagcgcgcgcaaagaaagttgaagaagac
ttgcacgagctggaagaatctggcgaaagcaaaggtgctgcaaaatctaagctgcgcgct
agtgcagaacgcgaaatgtctgctattcgcacccgttacgacgagcagattcagcgtttg
aatgccgtgttcgaccgcttcaagggcttgcgtgccggagacatggaaggcgacgttgac
ttgtggcgcgagatggaagatcgctacggtgactacttcgaaggctgcatgggtgctgaa
gctattaagaagcgtttgcaggacttcgatttgaagtctgccgcagaggagcttcgcgca
gaaatcgacaacggaaccggtcagcgcaaggctcgcgctttgaagcgactgaaggttgta
aacgcattcttgactactggaaacaagccagaagctatggttttggacgtaattccagta
atcccaccagatttgcgaccaatggttcagctcgatggtggtcgttttgcaacttccgat
ttgaacgatttgtaccgtcgcgtaatcaaccgtaacaaccgtttgaagcgacttattgag
ctcggcgctcctgaaatcatgcttaataacgaaaagcgcatgcttcaggaagcagtcgat
tcgctcttcgacaacggtcgccgcggacgcccagtaaccggcgcatccaaccgaccatta
aagtcgctttccgacatgcttaagggtaagcaaggtcgattccgccagaacttgctcggt
aagcgtgttgattactccggccgttccgtaatcgtcgttggtccaagccttcgcatgcat
cagtgcggtttgccaaagccaatggcattggagctgtttaagccgttcgttattaagcgt
ttggtagatcagggctttgctcagaatatgaagagcgcaaagcgtttggttgaccgcggc
gactccgaagtttggggcgtgctcgaggaagttatttccgagcatcctgtgcttcttaac
cgcgcacctacacttcaccgcttgggtattcaagcatttgagccaattttggttgaaggt
aaagcaatccacctgccaccacttgcctgcgcagcattcaacgcagacttcgatggtgac
cagatggcagtgcatcttccgctttctgccgaagctcaagccgaagctcgtactttgatg
atggcttccgacaatatcttgaagccagcagacggtcacaccgttacaatgccttctcag
gatatgattctgggtctttactacttgtctaccgtaattgacgaagcaaaaggtcaaggt
cgaatcttctcctcgcttgctgaagctgaaatggctctcgacaagcatgagattgacatg
caagctaaggtgctgattcgagttcctgcagacttcgtattgccaaagaattgggagcct
gctgagcttaaggttgttgaccctgagccaggcagcccggacgttgtgcgcgaagagcgt
tttaaggacggaactgtactgtttgcaacttcttgcggacgcattttgttcaacggaact
ttgccattcgactatccgttcgtaaacgagcaggtgccaaagggcgtactttctaagatc
gtcgacgaaatcgcaacccgctattctacagctcaagttgcagcaacactcgacgctttg
aaggatctcggctttactcgcgctccttggtctggcgtaacgatggcattctccgacatt
gttcttcctccaaatcgcgaacaaatcgcgcaagattacgaggatcaggctgcaaaaatc
aactcccagtacgatatgggtcttcttaccgacgaagaacgtcgtcaagagttgatcaac
ttgtggactgaatgcaccgacaaggttgcagacgcaatgcgcgaaaacttccacgacgac
aacaacgtgaacatcatggttcagtcaggcgcacgtggtaactggatgcagattcgccag
attgctggtatgcgaggcctcgtggcaaaccctaagggcgagattattcctcgacctgtt
aagtcaaactaccgcgacggcttgtccgtgttggagtacttcatctcccagcacggcgct
cgtaagggcctggcagataccgcacttcgtacggcagaatctggctacttgactcgtcgt
cttgtggacgtttcgcaggaagtaatcgttcgcgaagaagattgtggcactaagcgcggt
cttatgatgaagattgctgatcacgacgaaaacggcaatttgacgcttgttaaggctgct
gacggtggcccatactcgcgcttgcttgctgcagacgtaattgaccctgccgacggtaca
acagttttggcaaagtgtggagacgcgctttctatggacgttttgcgtgatttggttgcg
cacggcgttgaggaagttaaggcgcgttctgtgcttacttgcgaatccaagcgtggtgtt
tgcgcaaagtgctacggctggtccttggctacgagccgactcgtggatgttggcgaggct
gttggtattgttgcagcacagtccattggtgagcctggtacgcagcttacgcttcgttcc
ttccactccggtggtgttgcttctgcttccgatattacgcagggtcttcctcgtgttacg
gagcttttcgaggctcgtactcctaagggcgaggctccaattgctgagttcccaggcgtt
gtgaaggttgaggataccgaccacggccgtcaggtgactttgactccagacgacacaacc
gttgagccaatcgtttaccctgtgacgcgtcgtgcgccaatgctggtaaaggatggcgag
catgttgacgttggtacgcagctgattgaaggttctgtggatcctaagaagattcttcga
atccttggtccgcgtgcagctcaggtaaatattgtggaagaggttcacaacgtttaccgt
tctcagggcgttgatattcacgataagcacattgaagttattgtgcaccagatgcttcgc
cgtattacggtgatcgattctggcgatacggatcttcttccaggtgagcttgtggatcaa
gcaaagttccgcgaggcaaacttggctgctgtaaagaacggcggaaagcctgctgctggt
cgaccagagcttatgggtattaccaaggcttcgttggctacggattcttggctttctgca
gcatcgttccaggagactacgcgcgtgcttactgaggccgccttgagccagaaggaagat
gaccttaagggcttgaaggagaatgtgattatcggtaagctcatcccagctggtaccggt
ttggcgcgttaccgcaatgctaatgtggagccggatcctcaagttcgcgactctatttat
ccaaacttcggtttgggcggtgcggatagcacgccttcgaacttcggtgagagcgatatg
ggtgatgttgacttctccaacattgattttggcgatatgaagctcggcgacgactttaat
ccagatgacttccttgacgatcagggtggtcagagcgattatggcgacgaagctgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (52)   

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