KEGG   Komagataeibacter xylinus: H845_1989
Entry
H845_1989         CDS       T03044                                 
Name
(GenBank) putative DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
gxl  Komagataeibacter xylinus
Pathway
gxl03030  DNA replication
gxl03410  Base excision repair
gxl03420  Nucleotide excision repair
gxl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gxl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    H845_1989
   03410 Base excision repair
    H845_1989
   03420 Nucleotide excision repair
    H845_1989
   03430 Mismatch repair
    H845_1989
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gxl03032]
    H845_1989
   03400 DNA repair and recombination proteins [BR:gxl03400]
    H845_1989
Enzymes [BR:gxl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     H845_1989
DNA replication proteins [BR:gxl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     H845_1989
DNA repair and recombination proteins [BR:gxl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     H845_1989
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     H845_1989
   MMR (mismatch excision repair)
    DNA ligase
     H845_1989
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      H845_1989
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT DNA_ligase_ZBD HHH_2 HHH_5 PTCB-BRCT RUBY_RBDX
Other DBs
NCBI-ProteinID: AHI25927
Position
2135730..2137877
AA seq 715 aa
MPHAAPSGSLAEQARRLLADYATMEQDKTHAEATLAQLATLLPALDAAYHQHDAPVVDDA
TYDSLRRLNAELEDRFPDLRRADSPTEKVGAPASGPFHRHRHMVPMLSLDNVFSREEFEG
FISRIARFLGLGEDQARALSFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANL
RTLKDIPEHLPAPFPDVIEIRGEVFLSKQAFLELNAAQERAGEKSFANPRNAAAGSLRQL
DPKVTARRPLSLFAYAAGFCDAPLAPTHHGYLEQLAAWGFVVNPLSTQVKNAAEAEAFME
RLTLERSALDYDIDGVVYKLDDRALQDRLGFAGRAPRWAVAWKFPAEQAITRLEKIDIQV
GRTGALTPVAFLEAVNVGGVIVTRASLHNEDEITRKDIREGDLVHVQRAGDVIPQVTGVV
LPRDHDRPPFHFPHTCPVCGAHAERPEGEVVWRCSGGLSCPAQVVERLIHFVSRDAFDID
GLGDRTIVEFHELGWLRTPADIFRLPEHEAEIASRDGWGKVSARNLVNAIEARRTIELSR
LIYALGIRRIGINNARLLARHYGSMANWRQQMEKAAVIGSDARLELGSITGIGSAIADEL
VSFFAEAHNRATLDDLTSVLAQVTDEEMVAEGALSGKTIVFTGTLTTMTRPEARAVAERL
GARVSDSVSKKTDLVVLGEKAGSKARKAAELGVATMDEASWRTLAGMPPVGEQTA
NT seq 2148 nt   +upstreamnt  +downstreamnt
atgccccatgccgcaccgtccgggtccctggccgagcaggcccgccgcctgctggcggac
tatgccacgatggaacaggacaaaacgcacgccgaagccacgctggcgcagcttgcaaca
ttgctgcccgcgctggacgccgcgtatcaccagcatgacgcgcctgtggttgatgatgcg
acctatgacagcctgcgccggctgaacgccgaactggaagaccgcttccccgacctgcgc
cgcgccgacagcccgacggaaaaggtcggcgcacccgccagcggtcccttccaccgccac
cggcacatggtgcccatgctgtcgctggacaatgtgttctcgcgtgaggaattcgagggg
ttcataagccgcattgcccgcttcctcgggctgggggaggatcaggcgcgcgccctgtcc
tttgtcgcggaacccaagattgacggcctgtccataagcctgacctacgaacatggccgt
ttcgtacgcggcaccacgcgcggcgacggcaccgaaggcgaggacgtgaccgccaacctg
cgcacgctgaaggacattcccgaacacctgcccgcccccttccccgatgtgatcgagatc
cggggcgaggtcttcctgtccaagcaggccttccttgaactgaacgcggcgcaggaacgc
gcgggcgaaaaatccttcgccaacccgcgcaacgccgcggccggatcgctgcgccagctt
gacccgaaggtgacggcccgccgcccgctgtcgctgttcgcctatgctgccggcttctgc
gacgcgccgctcgcacccacccaccacggctaccttgaacagcttgcggcatgggggttc
gtggtcaatccgctcagcacgcaggtaaagaatgcggccgaagccgaagccttcatggag
cggctgacgctggaacgctcggcgctggattacgacattgacggcgtggtgtacaagctc
gatgaccgcgcgctacaagatcgcctgggctttgcaggccgtgcgccacgctgggcggtg
gcatggaaattccccgccgagcaggccatcacccgcctggagaagatcgacatacaggtc
ggccgcaccggcgcgctgacgccggtggcgttcctggaggcggtgaacgtgggcggcgtg
atcgtcacccgcgccagcctgcataatgaggacgagatcacgcgcaaggacatacgcgaa
ggcgaccttgtgcatgtgcagcgcgcgggcgacgtgatcccgcaggtgaccggcgtggtg
ctgccacgtgaccatgaccgcccgcccttccactttccccatacctgcccggtctgtggc
gcgcatgccgaacggccggagggcgaggtcgtgtggcggtgttccggtggcctgagctgc
ccggcgcaggtggtggaacggctgatccatttcgtatcgcgcgatgcgttcgacattgac
gggctgggtgatcgcacgatcgtggaattccacgaactgggctggctgcgcacgcctgcc
gatattttccgcctgcccgaacacgaagccgaaatcgccagccgcgacgggtggggcaag
gtttcggcccgcaacctggtcaatgccatcgaagcgcgacgcaccattgaactgtcgcgc
ctgatctacgcgctgggcatccgccgcatcggcatcaacaacgcccgcctgctggcccgg
cattacgggtccatggccaactggcggcagcagatggaaaaggcggcggtcatcgggtcg
gacgcgcggctggaactggggtcgatcaccggcatcgggtccgccatcgccgacgagctg
gtgtcgttctttgccgaagcccataaccgcgccacgctggatgacctgacttcggtgctg
gcgcaggtcacggatgaggaaatggtggccgagggcgcgctgtcgggcaagaccatcgtg
ttcaccggcacgctgaccaccatgacccgccccgaagcccgcgccgtggccgaacggctg
ggcgcacgcgtatccgacagtgtctccaagaagaccgaccttgtggtgctgggcgaaaag
gccggctccaaggcgcgcaaggcggccgagctgggtgtcgccaccatggatgaagccagc
tggcgcacgctggcgggcatgcccccggtgggggaacagaccgcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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