KEGG   Paenibacillus sp. Y412MC10: GYMC10_1559
Entry
GYMC10_1559       CDS       T01100                                 
Name
(GenBank) Holliday junction DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
gym  Paenibacillus sp. Y412MC10
Pathway
gym03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gym00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    GYMC10_1559
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gym03400]
    GYMC10_1559
Enzymes [BR:gym01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GYMC10_1559
DNA repair and recombination proteins [BR:gym03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     GYMC10_1559
    RecFOR pathway proteins
     GYMC10_1559
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 Mg_chelatase TIP49 AAA_16 AAA_14 AAA_22 nSTAND3 NB-ARC RNA_helicase NTPase_1 AAA_18 AAA_3 DUF815 Rad17 TsaE AAA_24 Resolvase Bac_DnaA Sigma54_activ_2 Sigma54_activat AAA_2 AAA_28 AAA_17 AAA_25 NACHT bpMoxR IstB_IS21 AAA_19 ABC_tran AAA_33 ATPase_2 Parvo_NS1 RsgA_GTPase
Other DBs
NCBI-ProteinID: ACX63843
UniProt: D3EKS3
Position
1844066..1845073
AA seq 335 aa
MDDRIISANLMMDEQAVELSLRPRYLAEYIGQNQVKENLKVYIEAAKMRNEALDHVLLYG
PPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHRTV
EEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRLE
FYTVDELSYIVSRNADLLGIEILGEAAEEIALRSRGTPRIANRLLKRVRDYAQVRGDGMI
TPSIAQEALKMLQIDPMGLDFIDHKMLNAMIKSFRGGPVGLDTIAATIGEESQTIEDVYE
PYLLQIGYLQRTPRGRVVTPTAYQHLGIPFPEDRR
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggatgatcgaattatttctgccaatctgatgatggacgaacaggctgtcgaacttagt
ctgcgtcctcgttatttggctgaatatataggacagaatcaagtaaaggaaaatttgaag
gtatatatcgaggctgcaaaaatgcgcaacgaggcgcttgaccacgtgctgctgtacggt
cctccgggactaggcaaaacgacgctggccaatattatcgccaatgagcttggcgttaat
ctgcggacgacgtccggcccggccatcgaacggcctggcgatctggcggcgcttttgacc
aatctgcaggaaggagacgtcctgtttattgacgagatccaccggctgcaccggacggtg
gaggaagtgatgtatccggccatggaggattttgcgctggatattatgatcgggaaaggg
ccaagcgcacgctccgttcgcctggatctcccgccgttcaccctaattggcgcgacaacc
cgggctggcctgctctcagcgccgctgagggaccgttttggtgtggtaagccgtctggaa
ttctatacggtagatgagctgagctacattgtgtcacgcaatgccgatcttttggggatc
gagatattgggagaggctgcagaagagattgccctaagatctcgggggacaccgcgcatt
gcgaaccgcctgttgaagcgggtacgcgattatgcgcaggttcggggcgacggcatgatc
acgccaagcatcgcgcaggaagcgctgaagatgctccaaatcgatccgatgggcctggat
tttatcgatcacaaaatgctgaacgccatgatcaagagcttccgcgggggacctgtggga
ctggataccattgccgcaaccatcggggaagaaagccaaaccatagaggatgtttatgaa
ccgtatcttctacagatcggttatttgcagcgtacgccgcggggacgcgtcgttacgcct
acagcttatcagcatttaggcattccctttccggaggatcgccgctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (37)   
   Pfam (37)   
All databases (47)   

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