KEGG   Halohasta litchfieldiae: halTADL_2053
Entry
halTADL_2053      CDS       T05239                                 
Name
(GenBank) excinuclease ABC subunit C
  KO
K03703  excinuclease ABC subunit C
Organism
hae  Halohasta litchfieldiae
Pathway
hae03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    halTADL_2053
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hae03400]
    halTADL_2053
DNA repair and recombination proteins [BR:hae03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     halTADL_2053
SSDB
Motif
Pfam: UvrC_RNaseH_dom HHH_5 HHH_2 HHH GIY-YIG UVR 5_3_exonuc HHH_3
Other DBs
NCBI-ProteinID: ATW88800
Position
complement(1970354..1972087)
AA seq 577 aa
MQRSTLAEQARSAPSEPGVYQFHDGETVLYVGKAVDIRSRVRSYTDPRSNRIRRMVRQAD
RIEFAVTDTETQALLLEANLIKRHQPRYNVRLKDDKSYPLVQLTNHPIPRIEITRDPSDA
ATVFGPFTDKGRVETVVKAIRETYGLRGCSDHKYSGRDRPCLDYEMGLCTAPCTGEIDPE
SYREDVQAAVRFFEGETGVLADPLRREMETAAEGQAFERAANLRDRLKTVENFHGGGESA
VSGHSRERAVDVLGVSVEGDQATVARLHSEDGQLVDRSRHTLDAPDDDARIPALLSAFIP
QYYAEREFPDALLLSERPSDSEVTEWLEAEGVAVRVPGAGREATLVDLALKNARQGPVAG
DPLGTLGDELGIGRPTRIEGFDVSHSQGKAVVGSNVCFVDGSAAKSDYRRKKLTDRNDDY
ANMYDLIEWRASRAVEGRDDRPDPDLLLIDGGEGQLGAALDALEATGWDVPAVALAKERE
LIVTPDRVFDWPNDADHLHVCQRVRDEAHRFAVQYHQTLRDEVATALDGISGVGPETRRR
LLGRFGSVENVRNASEEDLKDVDGVGTKTAAAISQRL
NT seq 1734 nt   +upstreamnt  +downstreamnt
atgcagcgctcgacgctcgccgagcaggcccggtcggcccccagcgagccgggggtctac
cagttccacgacggcgagacggtgctctacgtcggcaaggcggtcgacatccgctcgcgg
gtgcgatcctacaccgacccacggtccaatcgcatccgccgaatggtccgacaggcagac
cgcatcgagttcgccgtcactgacacagagacgcaagcgctcctgctcgaagcgaacctg
atcaaacgccaccagccgcggtacaacgtccggctgaaggacgacaaatcctatccgctg
gtccagctcacaaatcatccgattccgcggatcgaaatcacccgagatcccagcgacgct
gcaaccgtctttggcccctttactgacaagggccgcgtcgaaacagtcgtcaaggcgatc
cgcgaaacctacgggcttcggggctgttcggaccacaaatatagtggtcgggatcggccc
tgtctggactacgagatgggactctgtaccgcgccctgtaccggcgagatcgatcccgag
agctaccgggaggacgtccaagccgcagtccgattcttcgagggcgaaactggcgtgctt
gccgatccgctccgacgagagatggagaccgccgccgaagggcaggctttcgagcgggcc
gcgaacctccgggatcggctcaaaaccgtcgagaactttcacggtggtggcgagtcggcc
gtctcgggccacagccgggagcgagccgtcgacgtcctcggcgtctccgtcgagggcgat
caggcgacggttgctcggctccacagcgaggacggccaactggtcgaccggtcgcggcac
acactcgatgcgccggacgatgacgctcgaatcccggcgctgctttcggcgtttatccca
cagtattacgccgagcgggagttccccgacgccctcctgctgtcggagcgaccgagcgat
tcggaggtcacagagtggctcgaagccgagggagtcgccgtccgcgtgccgggagccgga
cgcgaggcgacgctggtcgacttagccctgaaaaatgcccggcagggaccggtcgctggc
gatcccctcggcacactcggcgacgaactcggaatcggtcgaccgacccgcatcgaaggc
ttcgatgtaagccactcacaggggaaggcggtcgtcgggagcaacgtctgtttcgtcgac
ggcagcgccgcaaaaagcgactaccgacggaagaagctgaccgaccgaaacgacgactac
gcgaatatgtacgacctcatcgagtggcgagccagccgggcggtcgagggccgcgatgac
cgacccgatccggaccttctgctcattgacggcggcgagggacagctcggcgcggcgctc
gacgccctcgaagcgaccggctgggacgtgccagcagtcgcgttggccaaggagcgagaa
ctcatcgtcacccccgaccgggttttcgactggccgaacgacgccgaccacctccacgtc
tgccagcgcgtccgcgacgaggcccatcggttcgccgtccagtaccatcagacgctccgc
gacgaggttgcgacggccctcgacgggatttcgggcgtcggtcccgagacgcggcgtcga
ctgctcgggcggttcgggagcgtcgaaaacgtccgcaacgcgtcggaggaggatttgaaa
gatgtcgacggcgttggcacgaagacggcggcagcgatcagccagcggctatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (35)   

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