KEGG T05423: C8233

Halomonas sp. SF2003: C8233_12165

Entry

C8233_12165       CDS       T05423

Name

(GenBank) RNA polymerase-associated protein RapA

K03580

ATP-dependent helicase HepA [EC:5.6.2.-]

Organism

haf Halomonas sp. SF2003

Brite

KEGG Orthology (KO) [BR:haf00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:haf03021]
    C8233_12165
Transcription machinery [BR:haf03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    RNA polymerase-associated proteins
     C8233_12165

SSDB

Motif

Pfam:

RapA_C Tudor_1_RapA SNF2-rel_dom Tudor_RapA Helicase_C ResIII DEAD Flavi_DEAD Helicase_RecD

Other DBs

NCBI-ProteinID:

AVV34301

Position

complement(2919121..2922063)

AA seq 980 aa
MSDFIPGQRWISDGEADLGLGTILNVDFRTVTVLFAASEETRTYSLREAPLTRVAFGNGD
RIQSDDGEWLIVDDFKEVRGQIVYICERSGEHAGELIELPEARLNDKMQFNQARDRLLTG
QVDRNDWFDLRYRTLRHFHRVEQSPALGLSGPKVDLVPHQLYIADEVSRRHAPRVLLADE
VGLGKTIEAGLILHRLLLSGRASRALILVPASLTHQWLVEMLRRFALDVSLLDEEQCKAY
GTRNPFEGNQIILASQDWLFANPSRQVQAAACDWDMLIVDEAHHLDWSEDKVGPGYACVE
SLARQTAGVLLLTATPEQMGLESHFARLRLLDPERYHDIERFKAEEQGYVAVASAIDALE
ALPADQSGLDSLASVLDDSDSRALLDTLMDSDADDAQRDSARRQLRDQLLDRHGTGRVMF
RNSRTHVAGFPERRLHVHELELPSSYRRVVRKLERDEDYLDDLLIETGMNHPEVVLFLDE
MYRALPDDRMNAEPWWQIDPRVMWLLETLTDLGNEKALVICHTADTARELSEGLRVLGGV
HAPVFHEGMSLVERDRAAAAFASEEEGVQLLVCSEIGSEGRNFQFCHHLVMFDLPVHPDQ
LEQRIGRLDRIGQQFPIEIHVPVFEGSPGAQLLRWYRDGMDAFSAPHGIGSELYAQFGDE
LEEALLDSEEIDSIIEQTRERFDALQEERQSGRNRLLELNACRHERAEEVIAAIETLDND
KALPGYLERAFDIFGIESRDLGDGITYLAPGPHMLDGLPGLVKGEEGFSVTSDRATALSR
EDVQHLSWEHPLVREMLVRILDGSMGNTALALLKHPAIPGGRLMTEVVFRTQSTAPRGLR
LGRFLPPTAIRVLLDETGSNLSDKVSFGGLAKNLKPVKKAVARDLIKQSHATLRKLMSDA
EQEAERELPTIVEQAQQQMREQLSAELARLEALASHNPAVREEELEALRQERAALDGAIE
TTRLRLDSVRVIVTVDAHER

NT seq 2943 nt +upstreamnt +downstreamnt
atgagcgacttcattcccggtcagcgctggatcagtgacggcgaggctgatctcggcctt
ggcaccatcctcaatgtcgacttccgtaccgtcaccgtgctctttgccgccagcgaagaa
acccgcacctacagtctgcgcgaagcgccccttacccgggtggccttcggcaatggcgac
cgcatccagtccgacgatggcgaatggctgatcgtcgatgacttcaaggaagtgcgcggc
cagatcgtctacatctgtgagcgcagcggcgagcatgccggcgagctcatcgagcttccc
gaagcccgcctgaacgacaagatgcagttcaatcaggcacgtgatcgcctgctgaccggc
caggtcgaccgcaatgactggttcgacctgcgctaccgcaccctgcgccacttccatcgt
gttgagcagagcccggcgctgggcctatccggccccaaggtcgatctggtgccgcaccag
ctctacatcgccgatgaagtctcgcgccgtcacgcaccgcgcgtactgctggccgatgaa
gtcggcctcggcaagaccatcgaagccggcctgatcctgcaccgcctgctgctcagcggc
cgcgccagccgtgcgctgatcctggtaccggcgagcctgacccaccagtggctggtcgag
atgctgcgccgcttcgcgctggatgtttcgctgctcgacgaggagcagtgcaaggcctac
ggcacgcgcaaccccttcgaaggcaaccagatcattctggccagccaggactggctgttc
gccaacccgtcgcgtcaggtccaggctgccgcctgcgattgggacatgctgatcgtcgat
gaggcccaccacctcgactggagcgaagacaaggtcggcccgggttacgcctgtgtcgaa
tccctcgctcgccagaccgccggtgtgctgctgctgaccgccacgccggagcagatgggg
ctcgagagccacttcgcgcgcctgcgcctgctcgacccggagcgctatcacgacatcgag
cgcttcaaggccgaggaacagggctatgtggccgtcgccagcgccatcgacgccctggaa
gcgctgcccgccgatcagtccggtctcgacagcctcgccagcgtgctggatgacagcgac
agccgcgccctgctcgacaccctgatggacagcgatgccgacgatgcccagcgcgacagc
gcgcgtcgtcagctgcgcgaccagctgctcgaccgccacggcaccggccgcgtgatgttc
cgcaactcacgcacccatgtcgccggcttccccgagcgtcgcctgcacgtccacgagctt
gagctgccctcctcctaccgtcgcgtggtacgcaagctggagcgtgacgaggactatctc
gatgacctgctgatcgagaccggcatgaaccaccccgaggtggtgctgttcctcgacgag
atgtatcgcgccctgcccgatgaccgcatgaacgcggagccctggtggcagatcgacccg
cgcgtcatgtggctgctggaaaccctgaccgacctcggcaacgagaaggcactggtgatc
tgtcataccgccgataccgcgcgtgagctgtccgaaggcctgcgcgtgctgggcggcgtg
catgcgccggtcttccatgagggcatgagcctggtcgagcgcgaccgtgccgccgcggcc
ttcgcctccgaagaggaaggcgtgcagctgctggtgtgctcggaaatcggctcggaaggt
cgcaacttccagttctgtcaccacctggtgatgttcgacctgccggtacatccggaccag
ctcgaacagcgcatcgggcgtctggatcgcatcggtcagcagttcccgatcgagatccac
gtgccggtcttcgaaggctcgccgggcgcccagctgctgcgctggtaccgtgacggcatg
gacgccttcagcgcgccgcacggcatcggcagcgagctctacgcccagttcggcgacgag
ctggaagaagccctgctcgacagcgaagagatcgacagcatcatcgagcagacccgcgag
cgcttcgacgccctgcaggaagagcgtcagtccggccgcaaccgcctgctggaactcaat
gcctgccgtcacgagcgcgccgaggaagtcatcgccgccatcgagacgctggacaacgac
aaggcgctgcccggctatctggagcgcgccttcgacatcttcggcatcgagagccgggac
ctcggcgacggcatcacctatctggcaccgggcccgcacatgctcgacggtctgccgggg
ctggtgaagggcgaggaaggcttcagcgtcaccagtgaccgcgccaccgcgctgtcacgc
gaagacgtgcagcatctgtcgtgggagcacccgctggtacgcgagatgctggtccgcatc
ctggacggctcgatgggcaacaccgcgctggcgctgctcaagcacccggcgattcccggt
ggccgcctgatgacggaagtggtgttccgcacccagtccaccgcgccgcgcggcctgcgt
ctgggccgcttcctgccgccgaccgccatccgtgtcctgctggatgaaaccggcagcaac
ctgtccgacaaggtgtccttcggcggactggccaagaacctcaagccggtcaagaaggcg
gtcgcgcgtgacctgatcaagcagagccacgccacgctgcgcaagctgatgagcgatgcc
gagcaggaagccgagcgcgaactgccgaccatcgtcgagcaggcccagcagcagatgcgc
gagcagctcagcgccgaactggcacgcctggaagcattggccagccacaacccggccgtg
cgcgaggaagagctcgaagcgctgcgtcaggagcgtgccgcgctggatggcgccatcgag
accacccgtctgcgtctggacagcgtgcgcgtcatcgtcaccgtggatgcccacgagcgt
tga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (15)   

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