KEGG T05423: C8233

Halomonas sp. SF2003: C8233_14850

Entry

C8233_14850       CDS       T05423

Symbol

rnd

Name

(GenBank) ribonuclease D

K03684

ribonuclease D [EC:3.1.13.5]

Organism

haf Halomonas sp. SF2003

Brite

KEGG Orthology (KO) [BR:haf00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:haf03016]
    C8233_14850 (rnd)
Enzymes [BR:haf01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     C8233_14850 (rnd)
Transfer RNA biogenesis [BR:haf03016]
Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    C8233_14850 (rnd)

SSDB

Motif

Pfam:

DNA_pol_A_exo1 HRDC RNAseD_HRDC_C

Other DBs

NCBI-ProteinID:

AVV35611

Position

3598969..3600150

AA seq 393 aa
MSDQPATALLSELDFEAVWVETPEALAAACAELEGADWLALDTEFIRESTFFPIPALVQL
MAARDGELPGADGKTPRIFLIDPTVVPASEALKRLLGAEGPLKLLHACGEDMEVFLRWAG
VAPTPLIDTQIAEGLTGGEASMGYQRLVERVVGVTVPKEETRSNWLKRPLSQAQCDYAAL
DVLFLPQVWSEQRDALLELDRMAWLEEDCRDPGSSGGATPDPEYWKRHRSLWKLSSRGLA
SWQVLCDWREEQIRLRDVPRSRLLADAQLFGICERLPTNRFELAKVDGMHPPQIKRHGDT
VLTLLKDVAMIDDSQLPRVPPSPLAPEWKNCMKRLKREVNAVAEAQQLKPEILGKRRDME
ALVIADYEGEPLPLPQGWRGELLAARLAKALES

NT seq 1182 nt +upstreamnt +downstreamnt
atgagtgatcaacccgccaccgcactgctgtcagaactcgatttcgaggccgtctgggtc
gagacccccgaggcgctggccgctgcctgtgcagaactggaaggcgccgattggctggcg
ttggacaccgaattcatccgcgagtcgaccttcttcccgattccggcactggtgcagctg
atggccgcccgtgacggcgagctgcccggtgcggacggcaagacgccgcgtatcttcctg
atcgaccccaccgtggtgccggccagcgaggcgctcaagcgtctgctgggggcagagggt
ccgctcaagctgctgcacgcctgtggcgaggacatggaagtcttcctgcgctgggcgggc
gtggcgccgacgccgctgatcgatacccagatcgccgaaggcctgaccggcggcgaagcc
tcgatgggctatcagcgtctggtcgagcgcgtggtgggcgtcaccgtgcccaaggaagag
acacgttccaactggctcaagcgccccttgagtcaggcgcagtgcgattacgccgcgctg
gacgtgctgttcctgccgcaggtgtggtccgagcagcgcgatgcgttgctcgagctggac
cgcatggcgtggcttgaggaggattgccgggacccgggcagcagcggcggtgccacgccg
gacccggagtactggaagcgtcatcgcagcctgtggaagctctcgtcgcgtggcctggcc
tcctggcaggtgctgtgtgactggcgcgaggagcagattcgtctgcgcgacgtgccgcgt
tcacgcctgctggccgatgcgcagctgttcgggatctgcgagcgactgccgaccaatcgc
ttcgagctggccaaggtcgatggcatgcatccgccgcagatcaagcgccacggggacacc
gtgctgacgctgctcaaggacgtggcgatgatcgatgacagtcagctgccgcgtgtgccg
ccgtcgccgttggcgccggagtggaagaactgcatgaagcgcctcaagcgtgaggtcaat
gcggtggcggaggcacagcagctcaagcctgagattctcggcaagcgccgtgacatggaa
gcgctggtgatcgccgattacgagggcgagccgctgcccttgccgcagggctggcgcggt
gagctgctggccgcgcgcctggccaaggcgctcgagagctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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