KEGG   Halomonas sp. GFAJ-1: BB497_14930
Entry
BB497_14930       CDS       T05375                                 
Name
(GenBank) excinuclease ABC subunit C
  KO
K03703  excinuclease ABC subunit C
Organism
hag  Halomonas sp. GFAJ-1
Pathway
hag03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hag00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BB497_14930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hag03400]
    BB497_14930
DNA repair and recombination proteins [BR:hag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BB497_14930
SSDB
Motif
Pfam: UvrC_RNaseH_dom HHH_5 UVR GIY-YIG HHH HHH_2 HHH_3 Utp14
Other DBs
NCBI-ProteinID: AVI63910
Position
3314557..3316371
AA seq 604 aa
MTFDAKQFLSSVSTSPGVYRMLDEEQNTLYVGKAKRLKARLASYFRGQLNTKTQAMVGRI
ADIQITVTRSETEALLLEQTLIKELRPPYNILLRDDKSYPFVFVTDRHSYPALEYKRARQ
RRDDGRYLGPYPSSGAVRESLALMQKIFRIRNCEDSVFAHRSRPCLQFQIQRCSAPCVGY
ISQEEYRRDVEHAVMCLEGKSEHVTQALTAEMETASHALNFEEAARLRDQIQQLRQLQQR
QFVDNESGDADIFALAQRPGALGVSVLSVRDGRLLGARHHMPKNDLDLPPEMLLTEVVSQ
YYFGQPHNVPSEVITSHPLEDSSLIASALSQQAGKRIRVASQVRGHRAQWQHLAMTNAEQ
QLASQLANRTQLTQRFEALQKALALDNIPERLECFDISHSHGEATVASCVVFDHQGPRKS
DYRHFRIEGVAAGDDYAAMQQALTRRLKRVKSGEAIAPDILIVDGGKGQLNMARSVLTDL
EVTDIILLGVAKGTTRKAGLETLFLETTDNPLPLDPASPALHLIQHIRDESHRFAIAGHR
AQRDKARRTSTLQDIPGIGPKRRRELLRFFGGLQGVQKASRDELSRVPGINAALAETIYN
ALNG
NT seq 1815 nt   +upstreamnt  +downstreamnt
atgacttttgatgccaagcagtttctgagttctgtaagtacctctccgggtgtttacaga
atgctagatgaggagcaaaacaccctctatgtcggcaaagccaagcgtttaaaagcgcgt
cttgccagctatttccgtggtcagctgaacaccaaaactcaggcaatggtcggacgaatt
gccgatattcaaattaccgttacccgcagcgaaaccgaagcactactgctggaacaaacg
ctgatcaaagagctgcggccgccctataacatcctattgagggatgataagtcctacccc
tttgtatttgtgaccgaccgccactcttatcctgcgcttgagtataagcgagcacgtcag
cggcgtgacgacggccgctacttaggaccctaccctagcagcggcgcggtgcgagaaagc
ctagccctcatgcagaaaatttttcgcatacgcaactgtgaggatagcgtttttgcccac
cggtcgcgcccctgcctccagttccaaatccagcgctgcagcgccccctgtgtaggctac
atctctcaggaagagtaccgccgcgacgtcgagcacgcggttatgtgcctggaaggcaaa
agcgagcacgtcacacaagcgctcactgccgaaatggaaactgccagccacgcactaaat
tttgaagaagctgcccgcttacgtgatcaaatacagcagcttaggcaactgcagcagcgt
cagtttgtcgataatgaaagcggcgatgccgatatctttgcactggcccagcggccgggc
gcactgggagtatccgtgcttagcgtgcgggatgggcgcctgcttggcgcacgacaccac
atgcctaaaaatgacctggacctgccaccggaaatgctactcaccgaggtcgttagccaa
tactattttggccaaccccataatgtgcccagcgaagtgatcaccagccacccgcttgaa
gacagcagcctgatcgcaagcgcattatcccagcaagcaggtaagcgcatacgcgttgcc
agccaggtacgcggccatcgcgcccagtggcaacatttggccatgactaatgcggagcag
cagcttgcttctcagttggctaacagaactcagctcacccaacgctttgaagcgctgcaa
aaagcgctagcgctcgataacattcccgagcgccttgagtgcttcgatattagccacagc
cacggcgaagcgacagtcgcctcctgcgtggtatttgaccatcaagggccgcgtaaaagc
gattatcgtcatttccgcatcgaaggggtggcagcaggggatgactacgccgccatgcag
caggcgctaacccggcgccttaaacgtgtaaaaagcggcgaagccatcgccccagatatt
ttgattgttgatggcggcaaagggcagctaaatatggcacgcagtgtactaactgacctg
gaagtaacggatattattttactcggcgttgccaaaggcactacgcgtaaagcgggactt
gaaactctgtttttagaaaccaccgacaaccctttaccgctggaccccgcctcgcccgcc
ctgcatttgatccagcacattcgggacgagtcgcaccgctttgccatcgccggacaccgc
gctcagcgggataaagcgcgacgcacatcgacgctacaagacattcctggcattggccct
aaacgcaggcgtgagctactgcggttttttggtggtctacagggcgtacagaaggctagc
cgcgatgaactatcccgagtgcccggcattaacgctgctcttgcagaaacaatttacaat
gcgcttaatggataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (15)   

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