KEGG T01603: Halar

Halophilic archaeon DL31: Halar_2932

Entry

Halar_2932        CDS       T01603

Name

(GenBank) UvrABC system protein B

K03702

excinuclease ABC subunit B

Organism

hah Halophilic archaeon DL31

Pathway

hah03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:hah00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Halar_2932
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hah03400]
    Halar_2932
DNA repair and recombination proteins [BR:hah03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Halar_2932
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Halar_2932

SSDB

Motif

Pfam:

UvrB_inter Helicase_C UvrB ResIII UVR DEAD UB2H AAA_30 DUF87 Obc1_cap

Other DBs

NCBI-ProteinID:

AEN06562

Position

complement(2142326..2144386)

AA seq 686 aa
MSDSESGPLSPDQPEAERPFRVDAPFEPAGDQPEAIEQLAAGYREGMDTQTLLGVTGSGK
TNTVSWTVEEIQQPTLVIAHNKTLAAQLYEEFRQLFPDNAVEYFVSYYDYYQPEAYVEQT
DTFIDKDASINEEIDRLRHSATRSLLTREDVIVVASVSAIYGLGDPANYIDMSLKLDVGE
EIGRDELLGQLVDLNYKRNDVEFTQGTFRVRGDTVEIFPMYGRYAVRLEFWGDEIDRIQK
VDTLEGEVKSKEPAVLLHPAEHYSIPEERLENAMAEIEDLMHDRVRHFETQGDLVAAQRI
EERTTFDLEMLQETGYCSGIENYSLHLSDREQGEAPYTLLDYFPDEFLTVVDESHQTLPQ
IKGQFAGDKSRKDSLVNNGFRLPTAYDNRPLTFEEFQEKTDETLYVSATPSEYEREQSEQ
IVEQIVRPTYLVDPAVEVTSAEGQVEDLLGRIDDRIERDERTLVTTLTKRMAEDLTEYLE
EAGVNVAYMHDETDTLERHEIIRSLRLGEIDVLVGINLLREGLDIPEVSLVAILDADQEG
FLRSTTTLVQTMGRAARNVNGEVVLYADKRTDAMEDAIEETQRRRAIQQRFNEEHGYEPR
TIEKEIGETNLPGSKTDTSSATGGEVSDADDAARQVDGLEERMEAAAENLEFELAADIRD
RIRELRQEFDLDGGDKGVAPEPDPEF

NT seq 2061 nt +upstreamnt +downstreamnt
atgagtgactccgagagcggtcctctctcaccggaccagcccgaggccgagcgcccgttc
cgcgtcgacgcgccgttcgagccagcgggcgaccagcccgaggctatcgaacagctcgcc
gcgggctaccgcgaggggatggatacccagacgctgctgggcgtgacggggtcggggaag
accaacaccgtctcctggacggtcgaggagattcagcagccgacactggtcatcgcccac
aacaagaccctcgccgcacagctctacgaggagttccgtcagctgttcccggacaacgcc
gtcgagtattttgtctcctactacgactactaccagcccgaagcgtacgtcgagcagacg
gacacgttcatcgacaaggacgcctccatcaacgaggaaatcgaccgcctgcgccactcc
gcgactcgctcgctgctcacccgcgaagacgtcatcgtcgtcgcctcggtctcggccatc
tacgggctgggggacccggccaactacatcgatatgtccctcaaactcgacgtgggcgag
gagatcggcagggacgaactgctgggccagttggtcgacctgaactacaagcgcaacgac
gtggagttcacgcagggtacgttccgggtgcggggcgacacggtcgaaatcttcccgatg
tacggccgctatgcggtccgcctcgagttctggggcgacgaaatcgaccgcatccagaaa
gtcgacaccctcgaaggcgaggtcaagagcaaggagcctgcggtgttgctccacccagcg
gagcactactccatcccggaggagcgtctggagaacgcgatggccgaaattgaggacctg
atgcacgaccgggtccggcatttcgagacccagggcgacctggtcgccgcccagcgcatc
gaggagcgaaccacgttcgacctcgagatgctgcaggagacgggctactgctcgggtatc
gagaactactcgctgcatctctcggaccgcgagcagggcgaggcgccgtacacgctgctg
gattacttccctgacgagttcctcaccgtcgtcgacgagtcccaccagaccctcccgcag
atcaagggccagttcgcgggcgacaaatcacgcaaagactcgctggtgaacaacgggttc
cggctcccaacggcctacgacaaccgcccgctcacgttcgaggagttccaggagaagacc
gacgagaccctctacgtctcggcaacgcccagtgagtacgaacgcgagcagagcgagcag
atcgtcgagcagatcgttcggcccacctacctcgtcgacccagccgtcgaggtcacgagc
gcagaggggcaggtcgaggacctgctggggcgcatcgacgaccgtatcgagcgtgacgag
cgcaccctcgtcacgacgctcaccaagcggatggccgaggacctcacggagtatctggag
gaagcgggggtgaacgtggcctatatgcacgacgagactgacacactggagcgccacgag
atcatccgctcgcttcgactcggtgaaatcgacgtactggttggcatcaacctcctgcga
gaagggctggacatccccgaagtaagcctcgtggccatcctcgacgccgaccaggagggg
ttcctccgctcgaccaccacgctcgtccagacgatgggccgtgcggcccggaacgtcaac
ggcgaagtggtgctgtacgctgacaagcgaactgatgcgatggaagacgccatcgaagag
acccagcgacggcgagccatccagcagcgattcaacgaggagcacggctacgagcctcga
acaatcgagaaggaaattggcgagaccaacctcccgggaagcaaaaccgacacgtccagc
gccaccggtggcgaggtcagcgacgccgacgacgccgcccggcaggtcgacggactcgag
gagcggatggaagcggccgcggagaatctcgagttcgagctcgcggcggatattcgcgac
cggattcgcgaactcagacaggagttcgaccttgatggcggcgacaaaggggttgcgccc
gaaccggacccagagttctga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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