KEGG   Hipposideros armiger (great roundleaf bat): 109382426
Entry
109382426         CDS       T04661                                 
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
hai  Hipposideros armiger (great roundleaf bat)
Pathway
hai03013  Nucleocytoplasmic transport
hai03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:hai00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    109382426 (UPF1)
   03015 mRNA surveillance pathway
    109382426 (UPF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hai03019]
    109382426 (UPF1)
Enzymes [BR:hai01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     109382426 (UPF1)
    5.6.2.5  RNA 5'-3' helicase
     109382426 (UPF1)
Messenger RNA biogenesis [BR:hai03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     109382426 (UPF1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     109382426 (UPF1)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 109382426
NCBI-ProteinID: XP_019497429
EnsemblRapid: ENSHARG00000010465
UniProt: A0A8B7R8P6
Position
Unknown
AA seq 1130 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGLGGPGGGGSG
GPVGAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKSRFGLPGPNQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq 3393 nt   +upstreamnt  +downstreamnt
atgagtgtggaggcgtacgggcccagctcgcagacactcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctt
cccagccagacgcagacgccccccggtggcctcggcggccccggaggtggcggctccggg
ggcccggtcggcgcgggccctggcgctgcggccggacagctcgacgctcaggttggagga
cctgagggcatcctgcagaacggggctgtggatgacagtgtggccaaaaccagccagttg
ttggccgagttgaacttcgaagaagatgaagaggatacctattacacaaaggacctccca
gtacatgcctgcagttactgcggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaaaaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccttgggggagaca
gtcctagagtgttacaactgtggctgccgtaatgtcttcctccttggcttcatccctgcc
aaagccgactcggtggtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctgatccaggaccgctgcttcctg
tcctggctggtcaagatcccttcagagcaggagcagctgcgcgctcggcaaatcactgct
cagcagatcaacaagctggaggagttgtggaaggagaatccttctgccaccttggaggac
ctggagaagccaggagtggacgaggagccacagcacgtcctcctgcggtacgaggatgcc
taccagtaccagaacatattcgggcctctggtcaagctagaggctgactacgacaagaag
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcctgcgatacaaaggg
gatctggcacccctgtggaaagggattggccacgtcatcaaggtccctgataattatggc
gatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacgcataac
ttccaggtggatttcgtgtggaagtccacctcgtttgacaggatgcagagcgcactgaag
acttttgccgtggatgagacctccgtgtcaggttacatctaccataagctgcttggccac
gaggtggaggacgtgatcatcaagtgccagctacccaagcgcttcacagcacaggggctg
cctgacctcaatcactctcaggtttatgctgtgaagactgtgctgcagagaccactgagc
ctgatccagggaccaccaggcacggggaagacggttacctcggccaccattgtctaccac
ctcgcgcggcaaggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggat
cagctgaccgagaagatccaccagactgggctgaaagtcgtgcggctctgtgccaagagc
cgcgaggccatcgactcaccagtgtcgttcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctccagaagctgcagcagctaaaggacgagactggagaactgtcg
tctgctgatgagaagcggtaccgggccctgaagcgcacggctgaaagggagctcctcatg
aacgcagatgtgatctgctgcacgtgtgtgggcgcgggagaccccaggctcgccaagatg
cagttccgctccattctaatcgatgagagcacccaggccactgagccagagtgcatggtc
cctgtggtcctcggagccaagcagctgatccttgtgggagatcactgccagctgggtcct
gtcgtgatgtgcaagaaggcggccaaggccgggctgtcccagtcactgtttgagcgccta
gtggtgctgggcattcgtccaatccgcctgcaggtccagtatcggatgcaccctgcgctc
agcgcctttccttcaaacatcttctatgagggttctctgcagaacggagtcactgcagcg
gatcgtgtgaagaaagggtttgacttccagtggccccaacctgataagccgatgttcttc
tacgtgacccagggccaggaggagatcgccagctcgggtacctcctacctgaacaggacg
gaggctgcaaacgtggagaagattaccacaaagctgctgaaggcaggtgccaagccagac
cagatcggcatcatcacgccatacgagggccagcgctcgtacctggtgcagtacatgcag
ttcagcggctcactgcacaccaagctctaccaggaggtggaaattgccagcgtggatgcg
ttccaggggcgtgagaaagacttcatcatcctttcctgtgtgcgggccaacgagcaccaa
ggcattgggtttttaaacgatcccaggcggcttaacgtggccctgacccgagcacgatat
ggggtcatcattgtgggcaatcccaaagcactgtctaagcagccactctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtagaggggcccctgaacaacctgcgggag
agcctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccctggcgcccgc
ttcatgaccacagccatgtatgatgcccgggaggccatcatcccaggatcggtctatgac
cggagcagccagggccggccctcaaacatgtacttccagacccatgaccagctcggcatg
atcagcgctggccccagccacgtggccgccatgaacatccccatccccttcaacctggtc
atgccacccatgccacccccagggtactttggacaggctaacggaccagctgcaggccgg
ggtaccccaaaaggcaagaccggtcgtggcggacgccaaaagagccgctttgggcttcct
gggcccaaccagacgaacctgcccagcagccaggctagccaggatgtggcgtcacagccc
ttctcgcagggcgccctgactcagggctacatctccatgagccagccttcccagatgagc
cagcccggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcccagatcgatgttgcgctgtcacaagattccacataccagggggagagggcataccaa
cacggcggagttacggggctgtcccagtactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (17)   
   Pfam (17)   
All databases (58)   

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