KEGG   Haloplanus rubicundus CBA1113: DU500_07245
Entry
DU500_07245       CDS       T05613                                 
Name
(GenBank) DNA double-strand break repair Rad50 ATPase
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
haj  Haloplanus rubicundus CBA1113
Brite
KEGG Orthology (KO) [BR:haj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:haj03400]
    DU500_07245
DNA repair and recombination proteins [BR:haj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     DU500_07245
    Archaeal homologous recombinant proteins
     DU500_07245
SSDB
Motif
Pfam: AAA_23 SMC_N AAA_15 zf-C4H2 AAA_21 AAA_27 AAA_13 AAA_29 SHE3 MscS_porin CENP-F_leu_zip Fib_alpha MAD ABC_tran GAS DUF2813
Other DBs
NCBI-ProteinID: AXG06255
UniProt: A0A345E233
Position
1433097..1435781
AA seq 894 aa
MKFDRIRLRNFRPYADADLDLRDGVTVIHGLNGSGKSSLLEACFFALYGSKALEGTLDDV
VSNGAEEAEIDLWFTHADAAYHVHRRLRASGERTTTADCVLEGPDATVEGARDVRAFVVD
LLRMDAEAFVNCAYVRQGEVNQLINASPAQRQDVIDDLLQLGRLEAYRDRAGDARLGIED
VRSGKRGELRKVESQIEEKEAENLYAALDDLESTLSEVDAKIDHYETQREKARETKSEAE
AVLEEYEAKRTELDSVADDIDDLEAAIREAESERETLRERVTEARERIDELEDGLDDRLD
TAGLDAATEAAVEARRDELDEREADYREERTEANASATGLRNQATNLAEKADDLADRAAD
VEERAEELRAEADDAEATAEEREARVADLENEAAELAARFEDAPVDRGEAATRRDDLRER
RGEVRERVAELEAKLESATERVAEAEALLAAGKCPECGQPVADSPHADPEDDRERVAELE
SELADAREQVTTLDDRIDALDELVAAEERLAEIETEHDRLEDRVTEAHETAAEKREAAEK
REAEATDLRERAAETREVATQKRDEADEAAARVDELTAELESIAEARERVDAISERLERI
ADLEDEIERRRERAAGIEETNDERRERLAEKRDRRDELRDAVDEDAIESAREQRANAEEY
LENVADELDALGERRDSIQTKIGGVRGEIEALESLRDERDELAECVAALDALHEEAERLE
ATYGDLRAELRQRNVETLERLLNETFDLVYGNDAYAHLRLNGEYELSVVQKDGSELDPTQ
LSGGERALFNLSLRCAIYRLLAEGIDGAAPMPPLILDEPTVFLDSGHVSRLVDLVAEMRD
MGVAQIVIVSHDEELVGAADDLVRVEKDPRTNRSTVTRAESAVDELAAGITDDD
NT seq 2685 nt   +upstreamnt  +downstreamnt
gtgaagttcgaccggattcgcctgcggaacttccgcccgtacgcggacgccgacctcgac
ttgcgcgacggcgtgacggtcatccacggcctcaacgggagcggcaagtcgtcgctcttg
gaggcgtgtttcttcgcgctctacgggtcgaaagcgctggaggggaccctcgacgacgtg
gtctccaacggcgccgaggaggccgaaatcgacctgtggttcacccacgccgacgcggcc
taccacgtccaccgtcgcctccgggcgtcgggcgagcggacgaccaccgcggactgcgtg
ctggagggaccggacgcgacggtcgagggcgcccgcgacgtgcgggcgttcgtcgtcgac
ttgctgcggatggacgccgaggcgttcgtcaactgcgcgtacgtgcggcagggcgaggtg
aaccagttgatcaacgcctcgccggcccaacggcaggacgtgatcgacgacctcctgcag
ctcgggcgactggaggcgtaccgcgaccgggccggcgacgctcgactcggcatcgaggac
gtgcgctccgggaagcggggcgaactccggaaggtggagtcacagatcgaggagaaggag
gccgagaacctctacgccgcgctcgacgacctggagtcgacgctgtccgaggtggacgcg
aagatcgaccactacgagacacagcgcgagaaggcccgggagacgaaaagcgaggccgag
gcggtgctggaggagtacgaagcgaagcggaccgaactcgactcggtcgcggacgacatc
gacgatctggaggcggcgatccgcgaggcggagtcggagcgcgagacgctgcgtgagcgg
gtaaccgaggcgcgcgagcggatcgacgagttggaagacgggctcgacgaccgcctcgac
acggcggggctggacgcggcgaccgaggcggctgtcgaggcgcgtcgcgacgaactcgac
gagcgcgaggccgactaccgcgaggagcgaaccgaggcgaacgcgtcggcgacggggctc
cggaatcaggcgacgaacctcgcggagaaggccgacgacctcgcggatcgggcggccgat
gtcgaggaacgcgcggaggaactgcgcgccgaggcggacgacgccgaggcgacggccgag
gagcgcgaggcacgcgtcgccgacctggagaacgaggcggccgaactggccgcccggttc
gaggacgcgccggtcgaccgcggcgaggccgcgacccggcgggacgacctccgcgagcgc
cgcggtgaggtccgtgaacgcgtggccgaactcgaagccaaactggagtcggcgacggag
cgcgtcgcggaggccgaggcgttgctggcggcggggaaatgccccgagtgcgggcagccg
gtcgcggactcgccccacgccgaccccgaggacgaccgcgagcgggtcgcggaactggag
tccgaactggccgacgcacgcgagcaggtgacgacgctcgacgaccggatcgacgcgctc
gacgagttggtcgcggccgaggagcgactggccgaaatcgagacggagcacgaccggctc
gaggaccgcgtgacggaggcccatgagacggccgcggaaaaacgcgaggcggccgagaag
cgtgaggcggaggcgacggacctgcgggagcgtgccgccgagacccgggaggtcgcgacc
cagaagcgcgacgaggccgacgaggccgcggcgcgggtcgacgagttgaccgccgagctg
gagtcgatagccgaggctcgcgagcgcgtcgacgccatttcggagcgcttggagcgaatc
gccgacctcgaagacgaaatcgagcgtcgtcgcgaacgggcggcgggcatcgaagagacc
aacgacgaacgccgggaacggctcgcggagaaacgcgaccgccgcgacgaactccgcgac
gccgtcgacgaggacgccatcgaatcggcccgcgagcagcgggcgaacgccgaggagtat
ctggagaacgtcgcggacgaactggacgcgctcggggagcgacgcgattcgatccagacg
aaaatcggcggcgtcagaggtgaaatcgaggcgctggagtcgcttcgggacgaacgcgac
gaactggccgagtgcgtcgccgccctcgatgccctccacgaggaggccgagcgcctcgaa
gccacgtacggcgatctgcgcgcggagcttcgccagcgcaacgtcgagacgctcgaacgc
ctcctcaacgagacgttcgacctcgtctacggcaacgacgcctacgcccacctccgcctg
aacggcgagtacgaactctcggtcgtccagaaggacggcagcgaactcgatccgacccag
ctgtcgggcggtgaacgcgccctgttcaacctcagcctgcgatgtgcgatctaccggctc
ctcgcggaggggatcgacggcgcggcgccgatgccgccgctcatcctcgacgagccgacc
gtctttctcgactcggggcacgtctcgcggctggtcgatctggtcgcggagatgcgcgac
atgggcgtagcgcagatcgtcatcgtgagccacgacgaggaactcgtcggcgcggccgac
gacctcgtgcgcgtcgagaaggatccgcggacgaaccgctcgacggtgacgcgggcggag
tcggcggtcgacgagctagcggccggcatcaccgacgacgactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (23)   

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