KEGG   Halobacterium salinarum NRC-1: VNG_6050G
Entry
VNG_6050G         CDS       T00038                                 
Symbol
tbpB_1
Name
(GenBank) transcription initiation factor IID
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
hal  Halobacterium salinarum NRC-1
Pathway
hal03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:hal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    VNG_6050G (tbpB_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hal03000]
    VNG_6050G (tbpB_1)
   03021 Transcription machinery [BR:hal03021]
    VNG_6050G (tbpB_1)
Transcription factors [BR:hal03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    VNG_6050G (tbpB_1)
Transcription machinery [BR:hal03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     VNG_6050G (tbpB_1)
  RNA polymerase III system
    TFIIIB
     VNG_6050G (tbpB_1)
  RNA polymerase I system
    SL1/TIF-1B
     VNG_6050G (tbpB_1)
SSDB
Motif
Pfam: TBP DUF3378 DUF2786
Other DBs
NCBI-ProteinID: AAG20743
UniProt: Q48325
Position
pNRC200:complement(39879..40439)
AA seq 186 aa
MSTLADTIHIENVVASSDLGQELALDQLSTDLPGAEYNPEDFPGVVYRLQEPKSATLIFR
SGKVVCTGAKSVDDVHEALGIVFGDIRELGIDVTSNPPIEVQNIVSSASLEQSLNLNAIA
IGLGLEQIEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGQNPDEAEQALAHVQDRLT
ELGLLD
NT seq 561 nt   +upstreamnt  +downstreamnt
atgagcacgctggcggacacgatccatatcgagaacgttgttgcatccagtgatctcggc
caagaactcgccctcgaccaactctccacagacctccccggcgccgagtacaacccagag
gacttccctggggtcgtctaccgcttgcaggagccgaagtcagccacgctgatcttccga
tcgggcaaagtcgtctgcaccggcgccaaaagcgtcgatgacgttcacgaagctctcggc
atcgttttcggtgacattcgcgagttaggcatcgatgtcacgagtaatccgcccatcgag
gtgcaaaacatcgtctccagcgcaagtctcgagcagtcgctgaacttgaacgcgattgcg
atcggcctggggctggagcaaatcgagtacgaacccgaacagttccccgggctcgtctac
cgccttgacgatcccgatgtcgtcgtcctcctcttcggcagtggcaaactcgtgattacc
ggcgggcaaaacccagacgaagccgagcaagcactcgctcacgtccaagaccgactcacc
gaactcggcctgcttgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (3)   
   Pfam (3)   
All databases (24)   

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