KEGG   Halorubrum sp. BOL3-1: EKH57_11120
Entry
EKH57_11120       CDS       T05834                                 
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
halb  Halorubrum sp. BOL3-1
Brite
KEGG Orthology (KO) [BR:halb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:halb03016]
    EKH57_11120 (thpR)
Enzymes [BR:halb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     EKH57_11120 (thpR)
Transfer RNA biogenesis [BR:halb03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    EKH57_11120 (thpR)
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS DUF5897
Other DBs
NCBI-ProteinID: QAU13231
UniProt: A0A410TQX4
Position
2116690..2117280
AA seq 196 aa
MRAFFAVDLPEALAPAVADAQAAFADASGVNPVDPEQAHATLKFCGDIDDATDDSAGGDD
SPVLDDVIAAGERAVDRAGFDPFDCEVGGLGVFPSREYVSVVWTGFDRGGESLAALNEAL
EAETTALGVDPADHAFTPHVTLARVENATGADAVRDALDAEKPDVGAFSVDEIRLVKSTL
TASGPEYGVVREFGLD
NT seq 591 nt   +upstreamnt  +downstreamnt
atgcgcgcgttcttcgccgtcgacctcccggaggccctcgcgcccgccgtcgcggacgcg
caggccgcgttcgcggacgcctccggagtcaacccggtcgatccggagcaggcgcacgcg
acgctgaagttctgcggcgatatcgacgacgcgaccgacgactccgccggcggcgacgac
tctcccgtcctcgacgacgtgatcgccgccggcgagcgcgcggtcgaccgcgccggcttc
gacccgttcgactgcgaggtcggcggtctcggcgtcttcccgagccgcgagtacgtctcg
gtcgtctggaccgggttcgaccgaggcggcgagtcgctcgccgctctcaacgaggccctc
gaagcggagacgacggcgctcggcgtcgacccggccgaccacgcgttcacgccgcacgtc
acgctggctcgggtcgagaacgcgaccggcgccgacgcggtccgggacgcgctcgacgcc
gagaagccggacgtcggagcgttctcggtcgacgagatccgactggtgaaatcgaccctg
accgcgtccgggccggagtacggcgtcgtccgagagttcggactcgactga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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