KEGG   Halocella sp. SP3-1: D7D81_05340
Entry
D7D81_05340       CDS       T05769                                 
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
  KO
K02405  RNA polymerase sigma factor FliA
Organism
hals  Halocella sp. SP3-1
Pathway
hals02020  Two-component system
hals02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:hals00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    D7D81_05340
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    D7D81_05340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hals03021]
    D7D81_05340
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:hals02035]
    D7D81_05340
Transcription machinery [BR:hals03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     D7D81_05340
Bacterial motility proteins [BR:hals02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    D7D81_05340
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 Sigma70_r4_2 Sigma70_ECF HTH_23 MarR HTH_38 MarR_2 HTH_37 UPF0122 GerE HTH_10
Other DBs
NCBI-ProteinID: AZO94061
Position
1118754..1119521
AA seq 255 aa
MPLADKEVAEIELWREFKENDSQAARQELIIKYLPQVKYQAGRLKMIVPDFIEQDDLESY
GVIGLIDALYKFDYRKGIKFKTYASRRIRGEIIDYLRKLDWLPHSVRREGKQLKSAADRF
FQKYGRRPSVDELATALNISKEKVSKLYYQIYSSQWVSVHEEIGDVELLDLLKEDQKSQP
EVVYHRKNNERLLSEAIEHLNESERLVISLYYYEGLTQVEIAEVMELSSARVSQLHKKAI
YRLRGSLARKKEQLL
NT seq 768 nt   +upstreamnt  +downstreamnt
atgccacttgcggataaggaagtagcagagatagaattatggcgggagtttaaagaaaat
gattcccaggctgctcgacaggaattaattattaaatatctccctcaggttaaataccag
gctggtaggttaaagatgattgtaccggattttatagaacaagatgacctggagagttat
ggggtaataggattaattgatgccctatataagtttgattaccgcaagggaattaagttt
aaaacctatgccagcaggaggatccggggagagattattgactatctccgtaagctggac
tggctgcctcactcagtacgccgggagggtaagcaattaaagtctgctgctgatagattt
tttcagaaatacggcaggcgcccttctgttgatgaactagcaacagctcttaatatctct
aaagaaaaggtcagcaaactatattatcagatttattcctctcagtgggtttctgtccat
gaagagataggtgatgtggaattacttgatctactaaaggaagaccagaagagtcaacct
gaagtagtttatcatagaaaaaacaatgaaagattactgtcagaggccattgaacatttg
aatgaatctgaaagattggttatttctttatattattatgaaggcctcactcaggtggaa
attgctgaagttatggaactgtcttcagcccgggtttcccagcttcacaaaaaagctatt
tatcgactgaggggttcactagcccgcaagaaagagcagttgttgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (13)   
   Pfam (13)   
All databases (21)   

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