KEGG   Halocella sp. SP3-1: D7D81_05730
Entry
D7D81_05730       CDS       T05769                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
hals  Halocella sp. SP3-1
Pathway
hals02020  Two-component system
hals02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:hals00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    D7D81_05730 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    D7D81_05730 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hals03021]
    D7D81_05730 (rpoN)
Transcription machinery [BR:hals03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     D7D81_05730 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_17 Xre-like-HTH HTH_Tnp_ISL3 HTH_23 Sigma70_r4_2 HTH_Crp_2 HTH_3 Sigma70_r4 HTH_IclR Hep_59 DUF4309 HTH_38
Other DBs
NCBI-ProteinID: AZO94134
Position
1205955..1207247
AA seq 430 aa
MDLGFNLNLEQKQKLVMTPQLQMAIEILQFSSQEMEEYIEEELAENPLLDRLDKQNYSSG
IDYSVNSDKENNYENYVAYKPNLLEHLERQLYQVLEENELELGKFIIGSLDEHGFLTSSC
RNIAKRFKSSVDKVESILRRIQYLDPVGIAASNVREALLIQLDSLMLDTGLAERIVRDYF
DCLVEKEYSFIRKKLAANEERVMGAINLIKTLNPHPASAYNTANEVKYIVPDLIVKENRG
EYLVISNEKSIPSLMINPYYHKMLKENKGTDVYEYLLGKYRSALWLMRSIEQRRFTIYRI
AEAIVKEQRDFLNLGIKYLKSMTMQEVADILGMHESTVSRATTEKYLQTPQGLFELKFFF
NSGVNNLSSVSIKALIADYIENEKPEFPLSDRELTELLKENRALDLSRRTVAKYRKEMGI
PSSNKRRKPK
NT seq 1293 nt   +upstreamnt  +downstreamnt
atggatctgggtttcaatttaaatctggaacaaaaacaaaaactggtgatgacacctcaa
ctccagatggcaattgaaattttacagttttcaagtcaggagatggaagagtatattgaa
gaggaactggctgaaaaccctctcctggatagattagacaaacagaattatagtagtgga
attgattattctgttaacagtgataaagagaataattatgaaaattatgttgcttataaa
cctaacttattagagcatttagaaagacagctatatcaggtactagaagaaaatgaactt
gagcttggaaaatttattattggaagccttgacgaacatggttttttaacatcttcctgt
cgaaatattgctaaaaggttcaaatccagtgtagataaggtggaaagtatacttagacgc
attcaatatttagatccggttggtattgcagctagtaatgtgagagaggcccttttaatc
cagctggatagtttaatgcttgatactggtctggctgaaagaattgtcagggattatttt
gattgtttagtagaaaaagaatattcttttataagaaaaaaactggcagcaaatgaggaa
agggttatgggggcaattaaccttattaagacattaaatccccatcctgcttcagcttat
aataccgctaatgaggtaaaatatattgttccggatttgattgttaaggaaaacaggggg
gaatatcttgttatttcaaatgaaaaaagtatcccatctttaatgattaatccgtattac
cataagatgctaaaagagaataaagggacagatgtttatgaatatttgttggggaaatac
cgttctgccctctggttgatgaggagcattgaacagaggagatttaccatttatcggata
gcagaggctattgttaaagaacagcgagatttcctgaatttaggtattaagtatttaaag
tcaatgactatgcaggaggttgctgatatactggggatgcatgaatcaacagtcagtagg
gctactacagagaaataccttcaaacccctcagggtttatttgagttaaaattctttttc
aatagtggagttaataacctttcttcagtaagtataaaagccttgatagctgactatatt
gaaaatgaaaaaccggaatttcctttaagtgatagggagcttaccgaattattaaaggaa
aacagggctttagacctatcaagaagaacggttgccaaatacaggaaagaaatggggatt
ccctcctcaaataaaaggagaaaaccaaaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (15)   
   Pfam (15)   
All databases (22)   

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