KEGG   Halocella sp. SP3-1: D7D81_12560
Entry
D7D81_12560       CDS       T05769                                 
Name
(GenBank) HU family DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
hals  Halocella sp. SP3-1
Brite
KEGG Orthology (KO) [BR:hals00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hals03032]
    D7D81_12560
   03036 Chromosome and associated proteins [BR:hals03036]
    D7D81_12560
   03400 DNA repair and recombination proteins [BR:hals03400]
    D7D81_12560
DNA replication proteins [BR:hals03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    D7D81_12560
Chromosome and associated proteins [BR:hals03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    D7D81_12560
DNA repair and recombination proteins [BR:hals03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      D7D81_12560
SSDB
Motif
Pfam: Bac_DNA_binding HU-CCDC81_euk_1 DUF2267 HU-HIG VP7
Other DBs
NCBI-ProteinID: AZO95359
Position
2608754..2609053
AA seq 99 aa
MTKTDLIDAVAEKTGLTKKDSGESVNAVFDTIVDYLSSEAAKQADDRDNVQIIGFGTFEV
RDRSSRKGRNPQTGEEITIPARTVPVFRAGKSFKDSVEG
NT seq 300 nt   +upstreamnt  +downstreamnt
atgactaaaactgatttaatcgatgctgtggcagaaaaaactggtttaaccaaaaaggat
tcaggagaaagtgttaatgcagtatttgatactattgttgattaccttagcagtgaagcc
gctaaacaggctgacgaccgtgataatgtccagataattggttttggtacttttgaagta
agagaccgtagttcacggaagggaaggaatccacagactggtgaggagattactattccc
gctagaacagtacctgtcttcagagctggtaaatcatttaaggactctgtggaaggatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (5)   
   Pfam (5)   
All databases (12)   

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