KEGG   Halomonas sp. R57-5: HALO3814
Entry
HALO3814          CDS       T04029                                 
Name
(GenBank) DNA ligase-Polydeoxyribonucleotide synthase [NAD(+)]
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ham  Halomonas sp. R57-5
Pathway
ham03030  DNA replication
ham03410  Base excision repair
ham03420  Nucleotide excision repair
ham03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ham00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HALO3814
   03410 Base excision repair
    HALO3814
   03420 Nucleotide excision repair
    HALO3814
   03430 Mismatch repair
    HALO3814
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ham03032]
    HALO3814
   03400 DNA repair and recombination proteins [BR:ham03400]
    HALO3814
Enzymes [BR:ham01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HALO3814
DNA replication proteins [BR:ham03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HALO3814
DNA repair and recombination proteins [BR:ham03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HALO3814
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HALO3814
   MMR (mismatch excision repair)
    DNA ligase
     HALO3814
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HALO3814
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH 5_3_exonuc DZR_2 RTC_insert
Other DBs
NCBI-ProteinID: CEP37496
UniProt: A0A0D6ECK6
Position
I:complement(4171548..4173581)
AA seq 677 aa
MSQSDSQPLEEITQLRAALDEANYRYYVLDEPTLTDADYDRKFQRLQQLESEHPERVTPD
SPTQRVGAAPADGFPSVAHAIPMLSLDNAFSRDDIHAFAERVAERLECAADDVEFTCEPK
LDGAAVSLVYEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLLGKNVPALLEVRGEVI
MRHAGFEALNERARQEDSKVFANPRNAAAGSLRQLDPRITAKRPLEFHAYQAARLEPDLG
DATHSELMKRLATLGFRASSELKVVKGPQAVADYCEQLGEKRDGLGFDIDGVVIKVNDLR
HQRELGFVARAPRWAVAFKYPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSN
ATLHNADEIKRLDVMIGDTVSIRRAGDVIPQVVSVHTELRPADARAIVFPEHCPVCGSDI
ERLEGEAVARCSGGLYCAAQRKEALKHFASRKALDIDGLGEKLIVQLVDLDWVETPAALF
HLTVEQLQSLPRMGEKSATNLVNALETAKSTTLARFIYALGIREVGEATAANLANHFGTL
DAIQAAELEALEAVNDVGPIVAAHVHTFFRQPHNQQTIAALIDAGITWQEAEVTQGPTPL
EGQTWVLTGSLESMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAVGSKLTKAEQMGVE
VVDEATFIERLAEWEQR
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgagtcagtctgattcacaaccgctggaagagattacccaactgcgggccgccctggac
gaggccaactaccgttactacgtgctcgatgaaccgacgctcacagatgccgactacgat
cgcaaatttcagcgcttgcagcagttggagagcgaacatccagaacgggtcacgcctgac
tcgccaacccagcgcgttggcgctgcccccgcggatggctttccctcggtagcccatgcg
atccccatgctgtcgctggataatgcctttagccgtgacgatatccacgcctttgccgag
cgagttgccgagcgccttgaatgcgccgcagacgacgttgagtttacctgcgagccaaaa
ttggatggcgcagccgtctcgctagtctacgaacagggcgtactggtaagcggggcaacg
agaggcgatggccgtaccggggaaggtattacctctaacctgcgcacgctgcgctcggta
ccgttaaagctgctgggcaaaaacgtgcctgcgctgctcgaagtgcggggcgaggtgatt
atgcgccatgcgggttttgaagccctgaacgagcgtgcccggcaagaggacagtaaggta
tttgccaacccgcgcaacgcggcggcgggcagcctgcgtcagctagacccgcgcatcacc
gctaaacgtccgctagagtttcacgcctaccaggctgcgcgcttggagccggatctgggc
gatgcgactcacagtgaattaatgaagcggttagccacgctaggctttcgtgccagttca
gagcttaaagtcgtcaaaggcccccaagccgttgctgactactgcgagcagttaggcgag
aagcgcgacggtctagggttcgatatcgatggcgtggtgatcaaggtgaatgacctgcgc
caccagcgtgaacttggctttgttgcccgcgcgccacgctgggcggtggcgttcaagtat
ccggctcaggaagaggtcaccaccctgaacgatgtggaatttcaggttggccgcaccggg
gcgattactcccgtggcgcgacttgaaccagtcaccgtggccggtgtgacggtttctaac
gccacgctgcacaacgctgatgagattaagcgcttagacgtaatgattggtgatacggtc
tcgattcgccgggccggtgatgtaattccccaagtggtgagtgtccataccgagctgcgc
ccagcggatgcaagggcgattgtttttcccgaacactgccccgtgtgcggttcggatatc
gagcgccttgaaggcgaagcggtggcgcgctgttccggcggtctttattgcgcggcgcag
cgcaaagaggcgctaaagcacttcgccagccgtaaagcgctggatattgacggcctgggc
gaaaagttgatcgtgcagttggtcgatttggactgggtggaaacccccgcggcgctgttc
cacttaaccgtcgagcagttgcaaagcctgccgcgtatgggcgagaagtccgccactaac
ttggtcaacgcgcttgaaaccgctaagtcgaccaccttggcgcggtttatttatgcgtta
ggaattcgtgaagtaggcgaggccacagcggccaacctggccaatcactttggtacccta
gacgccattcaagccgctgagttggaagcgctggaagcggttaacgatgtcggcccgatt
gttgccgcccatgtgcataccttctttcgtcagccccacaatcagcaaaccattgccgcg
ctgattgacgcaggcattacctggcaagaagcggaagtcacccagggcccaacgccactg
gaaggccagacctgggtgctcaccggctcgctggagagcatgacccgcgatgaaggtaag
gcgcggctgcaggcgctgggtgctaaggtggcaggcagcgtatcgaaaaagaccacctgt
ttggttgctggcgaagcggtgggcagtaaactgaccaaagccgaacagatgggcgtggaa
gtcgtcgacgaagctacctttattgaacgtttggcagagtgggagcagcgctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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