KEGG   Helianthus annuus (common sunflower): 110864350
Entry
110864350         CDS       T05101                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110864350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:han03021]
    110864350
Enzymes [BR:han01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     110864350
Transcription machinery [BR:han03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     110864350
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 110864350
NCBI-ProteinID: XP_021969087
Position
6:complement(2894453..2906623)
AA seq 1439 aa
MENEVFVEQQVPSGVLKSIRFKVLSEEDAEKASVKEVTVANEVTDPAFGFPNPASQCHTC
GAKDYRTCEGHIGLIKFPFTILHPYYLPEVAQILNKICPGCKNVRKDKAKNNVTASPVQT
PKVCKYCDKTFKDIYPPMKFKVSTKDVFGKTAIIVEIKGVKKLVSDKSLPHDYWNFVPND
PQQDATFSAFDRKVLTHVQVYQILKDVDPTFLKGSLGKKNKIFLQSFPLTPNCHRVAEFG
QNLTFDERTRAYRKMVGFRGTANELSACVLECIKLSKIRAEKPTLRDPDADDNPAKMHGL
KYMKEVSLGKRTDFCFRMVCVGDPYIKLDEIGVPHEIAETMLVSEQLNSFNWEKINASCG
LRILQRGEIFVRRRGRLVPVRYGDQLRIGDTVYRPLADGDVVLINRPPSIHSHSLIALRV
KVLPVNCVLSVNPLICSPLRGDFDGDSLHGYIPQSLESRVELRELVTLENQLVDKQSGKS
LLSLSHDSLTAAHLMLEDGVFFNRSQLQQLQMFCPRQQLQLPAVMKKFKHLWTGRQLFSL
VLDNEFDLDVGGTQIKNGEFVSSLNPSSCLQEGDENIYGYLIKNFSGDKVLEFLHSAQEL
LIEWVSMRGFSVSLLDLYLSSDSKRNMNDEVVYGLREAERQAHGQLLMVDGHQDFLTGNL
TGNEGYSELQSDKMCHDQQTLAALSRASAAAFKEVFRDLQSLIYSYVSKENSFVSMLKAG
SKGNMLKFVQHSMCVGYQHSLVPLSFHFPREFSCVSWNNHKRADLSFPSGVDRYVPYGVI
KSSFLSGLNPFEFLVHSVTNRDASFGGHADISGTLFRKLMFFMRDLYIGYDGTVRNCYGN
QLVQFTYNSENAPGESKSLLAKEECGAAVGSLAACAISEAAYGALDQPVSALENSPLLNL
KKVLECGVRKLSGNKTASLFLSQKLKRWHNGFEYGALDVKNHLEKLLFQDVVSLVTIFYS
QQTGKRSRNSPWICYFRISKEAADRKQLKVQSIINALRSKCADSSNFKKLKLSLPKLQIS
SKDYPEDDPMNENDENIFITAQIMDISSNSLNVLQDVVVPFLLETVIKGSPNVKKVEIVW
QDGPKTSKNFKESSGELYLRVFMSENCDRKNFWRSIIGDCIQIMDMIDWERSHSDDIQDV
ILAQGIDAARNHFLCTLKSAIEDTGKSILPQHLALAADCLSVAGEFAPINAKGLSLLRKQ
ASVSAPFTQACFANPSDCFVKAAKSEASDKLEGTIDALSWGKVPALGTGGRFDILFSGKE
HQIDKPVDVYGFLSKSIDSHEEKTEVVVECNKDNNKLVSNKSPALLFPYPDININATTDA
MKMVLKKHISAEDIKRLSKDLKHILYKYDVNHQLSKDDKLVAWKALFFHPRRDEKIGIGL
FEIKVGHNINHGNTRCFVVERVDGTTEDFSYHKCIHHALKLIAPFEATVYESRWLNGKE
NT seq 4320 nt   +upstreamnt  +downstreamnt
atggaaaatgaagtgtttgtagaacaacaagtaccatccggcgttcttaaaagcatacgc
ttcaaagttctatccgaggaagatgcagaaaaagcatcggtgaaggaagtcaccgtagcg
aatgaagtaaccgaccctgcgtttggattcccgaatcccgcatcacaatgccatacatgt
ggtgccaaggattaccgaacttgcgaaggtcacataggtttaataaaatttccgttcaca
atacttcatccttactatttaccggaagtcgcacaaattctgaataaaatctgtcccgga
tgtaaaaacgttagaaaagataaggccaagaataatgtcacggcatcccccgtacaaacc
cctaaagtttgcaaatattgcgataaaacctttaaagatatatatccacctatgaaattc
aaagtttcgacaaaagacgtattcggaaagactgcaatcattgtggaaataaaaggtgta
aagaagcttgtttcggataaaagtttacctcatgattattggaactttgttcctaacgat
cctcaacaagacgcaacgttttcagcatttgatcggaaagttcttacacacgtgcaggtt
tatcaaatattgaaagacgttgatccaacttttcttaaaggatcgcttggaaaaaagaac
aagatttttctccaaagtttccctttaactcccaactgtcaccgtgtagcagagtttggt
caaaatttgacttttgatgaacgcacaagggcatacagaaaaatggtaggctttcgtggt
actgcaaacgagctgagtgcatgtgtacttgagtgcataaaactttcaaagatacgagca
gagaaacctacgcttcgtgatcccgatgccgacgataatccggctaagatgcatggatta
aaatacatgaaagaagttagtctagggaagcgaaccgatttttgtttccgaatggtgtgt
gtcggtgacccgtacataaagctagacgaaatcggcgtaccccatgaaatagccgaaacg
atgctagtttccgagcaacttaattcattcaactgggaaaaaataaacgcatcttgtggc
ttacgaatccttcaacgcggagaaattttcgttaggcgaagaggtcgtttagttcccgtc
agatatggtgatcaattgcgaattggggataccgtttaccgtcctcttgctgacggagac
gttgttttgataaatagaccaccgtctattcattcgcactcactcattgctcttcgtgtc
aaagttctcccggtcaactgtgttctttcggtcaaccctttgatatgttctccgttacgg
ggcgattttgatggtgatagtcttcacgggtacattcctcaatcgttggaaagtagagtc
gagcttcgggagctcgttacgttggaaaaccagttggtcgataaacaaagtggcaagagt
ttattgtcgttgagtcatgatagtttgaccgctgctcatctgatgctcgaagacggtgtt
tttttcaaccgatcccaattgcaacagttacaaatgttttgtccacgtcagcagttgcaa
ctgccagctgtcatgaaaaagtttaaacatttatggaccgggaggcagttgtttagtctt
gttttggataacgaattcgatctcgatgtgggcgggacccaaatcaaaaacggagaattt
gtaagctcgttaaatccgtcttcttgcttacaagaaggtgacgagaatatatacggttat
ctgatcaaaaactttagcggcgataaggttctcgaattccttcactcggcacaagagttg
cttatcgaatgggtgtcaatgaggggatttagtgtctcgttattggatctttacttgtcg
tctgattcaaaacgtaatatgaatgacgaagttgtttacgggttgcgtgaagccgagcgg
caggctcacgggcagctgttaatggtggacgggcatcaagattttcttaccggaaacctg
accggaaacgagggttacagtgaactgcagtcggataaaatgtgtcatgatcaacaaacg
ttggctgcgttaagtcgagcatcggctgctgcttttaaagaagtgtttcgtgatcttcaa
tctctcatttacagttacgtctctaaagaaaactcgtttgtttcgatgttgaaagccggg
agtaaaggaaacatgctaaagtttgtgcagcatagcatgtgtgtcggttatcaacactcg
ttagtcccgctttcatttcacttccctcgcgagttttcgtgtgtttcgtggaacaaccat
aaaagggcagatttgtcttttccttcgggtgtggatagatacgttccttacggagtcata
aagagctcgttcttgtcgggccttaaccccttcgagtttttagtccattccgtgactaat
cgagacgcttcgtttggcgggcatgcggatatctccggaactttgtttagaaaactcatg
ttttttatgcgggacttgtacatcgggtatgacgggaccgtgagaaactgttacgggaat
cagctcgttcagtttacgtataattccgaaaacgcccctggtgaaagcaaatcacttttg
gctaaagaagagtgcggggccgctgtcggttccttggctgcgtgcgccatatccgaagcg
gcttacggtgcgttggatcagccagtcagcgcactcgagaactcacctttgctaaacttg
aagaaagtgcttgaatgtggcgttagaaaactctccggtaacaaaaccgcatcgcttttc
ttgtcgcaaaagcttaaaagatggcataacggattcgaatacggagcgttagatgtcaag
aatcatttggagaagctattgtttcaagacgttgtttcactcgtcaccattttctattcc
caacaaaccggcaaacgatctcgtaatagcccttggatttgctattttcgtataagcaag
gaagctgctgataggaagcaactaaaagtgcagtcgattatcaatgctctgaggtcaaag
tgtgctgactcatcaaatttcaagaaattaaaattaagtctaccgaaattacagatatca
tccaaagattatccggaagatgatccaatgaatgagaacgacgagaatatatttatcact
gctcaaataatggacatctcaagcaactcactaaatgtactccaagacgttgtggtgccg
ttccttctagaaaccgttataaaaggatctccgaatgtgaagaaagtggagattgtgtgg
caagacggtccgaaaacatcaaaaaattttaaagaatcttcgggtgaactttacttgcga
gttttcatgtcggaaaactgcgatagaaagaacttttggaggtctattataggcgattgt
attcaaataatggatatgatcgattgggaacgaagccattcagatgatattcaagatgtt
attttggcacaaggaatcgatgctgcaagaaaccactttctttgtacactgaaatcagcg
atagaagataccggtaaaagcatacttccccaacatttggcccttgctgctgactgttta
tcggtggctggagaattcgctccgataaatgcgaaagggctttccctactgagaaaacaa
gcatcggtttccgcaccatttactcaagcgtgttttgctaatccgtcggattgctttgtg
aaggctgcaaagagtgaggcttctgataaactcgaggggactattgatgcactctcatgg
ggaaaagtaccggctctcgggactggtggaagattcgacattttattttccgggaaggag
catcaaattgataaacccgtagatgtgtacggtttcttaagcaagagtattgattctcat
gaagagaagacggaggtggttgttgagtgtaataaggataataataagctcgtgagcaac
aaaagtcccgccctgttgtttccgtatccggatattaatataaacgcgactacagatgct
atgaaaatggtgttgaaaaagcatatatcggctgaagatattaaaagattatctaaagat
ctgaagcatatactttacaagtacgatgttaatcaccagttaagcaaagatgacaaactc
gttgcatggaaagctttgttttttcaccctcgaagggacgagaagattgggatcggactt
tttgaaataaaggtcgggcacaacataaatcatggaaatacacgttgctttgttgtggag
cgagtcgacggaacaacagaagatttctcgtatcacaaatgcatacatcacgcgttgaaa
ctgattgcaccgtttgaagcaaccgtatacgagtcaaggtggttgaatggaaaagagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (50)   

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