KEGG   Helianthus annuus (common sunflower): 110878399Help
Entry
110878399         CDS       T05101                                 

Definition
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110878399
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:han03041]
    110878399
Enzymes [BR:han01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     110878399
Spliceosome [BR:han03041]
 Complex C
  Other components
   Step II factors
    110878399
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HA2 OB_NTP_bind Helicase_C DEAD AAA_22 AAA_30 AAA_19 AAA_24 T2SSE DUF2075 ABC_tran ATPase DUF2532
Motif
Other DBs
NCBI-GeneID: 110878399
NCBI-ProteinID: XP_021982389
AA seq 705 aa AA seqDB search
MPTGDKRNFNSNNNATNQPQRLINADQKRRKIEQQRRSLPIASVEKRLVEEVWKNDTLII
VGETGSGKTTQLPQYLYNGGFCQNGGIIGITQPRRVAAVTVAKRVAEERCVELGQQVGYS
IRFEDVTSTSTRIKYMTDGLLLREALLDPKLSRYSVIVVDEAHERTVQTDVLLGLLKDVQ
KKRSQNSNGASGNYDHVKKDNNAKEKSNEVRKLNPLKLIIMSASLDARGFSEYFGGAKAV
HVMGRQFPVDILYTAQPETDCLDAALVTIFQIHMEEGPGDILVFLSGQEEIESIEGLVRE
NLKKLPEANQKLLIYPLFSSLPSEKQMKVFTPAPVGFRKVILATNIAETSVTIPGVKYVI
DPGLVKVRSYSPDSGIESLIVVKTSKAQALQRSGRAGREGPGKCYRLYPESRFEGLDDST
VPEIKRCNLSNVILQLSALGVDDIIGFDFMEKPDRMAVIRSLELLYLLGALTDEKKLSYP
IGHQMARLPLEPNDSKALILASQFDCLEEMLIVVSMLSVESIFYVPRDKLEESRTVIKSF
SSPEGDHLTLVNVYRASIEFLEKNKTENGNEKAEKNLRKWCKDNFINNRSLKHARDIYNQ
ILENVERMGLKISSCGDDMLPLRRCLAASYFLNAALKQPDGTYRVLANGQIAEIHPTSVL
RRSKPECIIFYNLVQTTRNYVRNVTRIDYLWLAELAPQCYALKDN
NT seq 2118 nt NT seq  +upstreamnt  +downstreamnt
atgccgacaggagacaaaagaaactttaattcaaacaacaacgccacaaatcagcctcaa
cgcttaatcaatgccgatcagaagcggcggaagattgagcaacagagaagatctttgccc
atcgcttcagttgagaaaaggcttgtagaagaggtttggaaaaatgataccttgataatt
gtcggtgaaacgggaagtgggaagacaacacaattgccccaatatttgtataacggagga
ttttgtcagaatggaggaataattggaatcactcaaccaagacgtgttgctgcggtaact
gttgcaaaacgtgtagctgaagaacgttgtgttgaattgggccagcaagttggctactcg
attaggtttgaggatgtgacctccacttcaaccaggattaagtacatgacagatggactg
ttattgagggaggcacttttggaccctaagctttcaaggtactcggttatagtcgttgat
gaagctcatgaaaggacagttcaaacggacgtgttgctaggtttgcttaaagatgtacaa
aagaagagatctcaaaattctaacggggcatcgggtaattatgatcacgtgaagaaggac
aacaatgcgaaagaaaaatctaacgaggttcgcaagttaaatccgttgaagttaattatc
atgtctgctagtttggatgcgcgtgggttctctgagtattttggtggtgcaaaagctgtt
catgtaatggggcggcaatttcctgtggatatcctttataccgcgcaacctgagacagac
tgtttggatgctgctttagttaccatatttcagatacatatggaggaagggcctggtgat
atacttgtttttttatctggtcaagaagagattgaatccattgagggtcttgtgcgggaa
aatctcaagaaattgccggaagccaatcagaaactcttaatttatccattgttctcttct
cttccatcggagaagcaaatgaaagttttcacacctgctccagttgggttcagaaaggtt
atactggcaacaaacattgctgaaacatcagtaacaataccaggagtcaagtatgttatt
gatcctggattggtaaaagtgcgcagttactctcctgacagtgggatcgaatctttgatt
gttgttaaaacttcgaaagctcaagctcttcaaagaagtgggcgtgcagggcgtgaagga
cctgggaaatgctatcgtctttatccagaaagcagatttgagggacttgatgattccaca
gtgccagagatcaaacgatgcaatctttcaaatgttattttgcaacttagtgctcttggc
gttgatgatataatcggctttgacttcatggagaaacctgacaggatggctgttatcaga
tcactggaattattgtacttgttaggagcattgacagatgaaaagaaattgtcatatcca
attggacatcaaatggcgcgtcttccattggaaccaaatgattcaaaggcactaatttta
gccagccagtttgattgtttggaagaaatgttgattgttgtctcgatgctatcagtggag
tccatcttttatgttcctcgtgacaagttagaagagtcacggactgtcattaaatctttc
tcaagcccagagggagaccatttgacgttagttaacgtgtatcgtgcttctattgagttt
ttggagaagaacaagacagagaatggtaacgagaaggctgaaaagaacttgaggaaatgg
tgcaaggataacttcattaataatcgttcattaaagcatgctcgtgacatttacaatcaa
attctggaaaatgtagaacgaatgggacttaagatatcttcatgtggagatgacatgctt
ccgctccgcagatgccttgctgcttcatatttcctgaatgcagccttaaagcagcctgat
ggtacatacagggttttggcaaatggtcagattgcagagattcacccaacttctgttcta
cggcgttcaaaacccgagtgcattattttctacaatttagttcaaacaacacgtaattat
gtgcgcaatgttactagaattgattatttgtggctagctgagctggcccctcaatgttat
gccttaaaggacaactag

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