KEGG   Helianthus annuus (common sunflower): 110909944
Entry
110909944         CDS       T05101                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110909944
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:han03041]
    110909944
Spliceosome [BR:han03041]
 Complex C
  Other components
   Step II factors
    110909944
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N AAA_22 SLFN-g3_helicase AAA_19 AAA_30 Flavi_DEAD nSTAND3 AAA_24 T2SSE Sigma54_activ_2 AAA_16 ABC_tran AAA_14 AAA_7 AAA_33 ATPase SRP54 ResIII Sigma54_activat Herpes_ori_bp
Other DBs
NCBI-GeneID: 110909944
NCBI-ProteinID: XP_022010355
Position
15:complement(2648743..2658099)
AA seq 1000 aa
MWSSLFNTKEVLEPDETSRCGLLKRKSLLEHDAHRSYHKHESKRANMEPRRYQADEAKRS
QSRDRGEHKDYYGNKRRKYERSRRSSGRTDSDGGRWECDDVSHSLAPIKASGSIRSSPSR
SSGTQMTHAQTKKRSQRAADNNQWEERQLMRSGAVRDKEMQTEFDDEEERKVILLVHETK
PPFLDGRSVFGKQADPIMPVKDPTSDMAIISRKGSKLVREIHEKQSISKSRQRFWELAGS
KLGDILGVEKSTEQIDADTAVVGEDGEVDFKEDAKFAQHLKKGEAVSDFAKSNSLAQQRQ
YLPIFSVRDELLQVVRENQVVVVVGETGSGKTTQLTQYLHEEGYTNNGIVGCTQPRRVAA
MSVAKRVSEEMETELGDLVGYAIRFEDVTGPKTVIKYMTDGVLLRETLKDADLDKYRVVV
MDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLDAQKFSNFFGSVPIFRIPGRTFP
VQILYSKSPCEDYVEAAVKQAMTIHITRPPGDILIFMTGQDEIEATCYALSERMQHLVST
TSGKARNLLILPMYSQLPADLQAKIFEKPEDGARKCIVATNIAETSLTVDGIYYVIDTGY
GKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTENAYLDEMLAQPVPE
IQRTNLGNVVLLLKSLNVENLLDFDFMDPPPQDNIVNSMYQLWVLGALSNTGSLTNVGWK
MVEFPLDPPLAKMLLIGERFKCLNEVVTIISMLSVPSVFFRPKDRAKESDDAREKFFVSE
SDHLTLLNVYQQWKANEYRGDWCNDHYLQLKALQKAREVRSQLLDILKTLKIGLSSCGPN
WDIVRKAICSTYFHNAARMKGVGEYVNCRNGMPCHLHPSSALYGSGDMPDYVVYHELILT
TKEYMQCVTCVDPRWLAELGPMFFSVKDSDTSMLEQTKKRKDEKSVMEEEIERLIKEEAE
AEMRKKAEEREKMKKRQQTICMPGWKQGSSTYPQHKRPGL
NT seq 3003 nt   +upstreamnt  +downstreamnt
atgtggtctagcttattcaacacaaaagaagtgttggaaccggatgaaacaagccgttgt
ggattactgaagagaaaatcgctattagagcatgatgcgcatagaagttatcacaagcat
gagtccaaaagagcaaacatggaaccaaggagatatcaagcagacgaggctaaaagaagt
caaagcagagacagaggggagcacaaagactattatgggaacaagagaagaaaatatgag
cgttcaaggaggtcgtctggtagaactgattcggatggtggaagatgggaatgcgatgat
gtttcccattctctagctccaattaaggcatctggatcaattagatcttcaccttcaaga
tctagtggaacgcagatgacacacgctcaaaccaaaaaacgatctcagcgtgctgctgat
aataaccagtgggaagaaagacaacttatgagatcgggtgccgttagagataaagaaatg
caaactgaatttgacgatgaggaagaacgcaaggttattcttcttgttcatgaaacaaag
cctccgtttttggatggaagaagtgtgttcggtaagcaagcagaccccataatgcccgta
aaagatccaacatccgatatggcaattatttcaagaaaaggttcaaaacttgttcgcgaa
atccatgaaaaacaaagcattagtaaatctcgtcagcggttttgggagcttgctggttca
aaactcggtgatattctcggtgttgaaaagtcaacagaacagattgatgctgataccgct
gtagttggtgaagatggcgaggttgattttaaggaagatgcaaagtttgctcaacatctt
aaaaaaggcgaagcagtaagcgactttgcaaagtcgaattcacttgcacaacaacgccaa
tatcttcctatattttctgttcgggatgaattgctgcaggtggtgagggagaatcaggtg
gtggtggttgtaggcgaaactggttccggaaaaacaacacaattaacgcagtatttgcat
gaagagggatatacaaataatggaatagttggttgtactcaaccaagacgtgtggcggca
atgagtgttgcgaaaagagtcagcgaagaaatggaaaccgaacttggagatctggttggt
tacgctattcgttttgaagacgtgactgggcccaagactgttataaagtacatgactgac
ggtgtgcttctgcgtgaaacattgaaagatgctgatcttgacaaataccgtgttgtagtg
atggacgaagcccatgaaagatcattaaacactgatgtcttattcgggatccttaaaaaa
gtagttgcaagacgtcgagacttcaagcttatcgttacttctgccaccctcgatgcacag
aaattttccaacttctttgggagtgttccaatcttccgtatccccgggagaacatttccg
gttcaaattctgtacagtaaaagcccctgcgaagattatgtcgaagccgctgtaaaacaa
gcaatgacgatccacatcacccgcccgcctggcgacatactaatattcatgacgggtcaa
gacgaaatcgaagccacatgttacgcactatcagagcgtatgcaacatctcgtttcaacc
acaagcggaaaagcgcgcaaccttttaatcctccctatgtactcgcaactcccagccgac
ttacaagcaaaaatctttgaaaaacccgaagacggggcccgcaaatgcatcgtggcgaca
aacatcgcggagacgtcgttaaccgtggatgggatttattacgttatcgacacggggtac
ggtaaaatgaaggtgtataatcctcgtatgggtatggatgctctccaggtgtttcctgtc
agccgggctgctgctgaccaacgggccgggcgggctgggcggactgggcccgggacttgc
taccgtctttatacagaaaacgcgtacctagacgaaatgcttgcgcaaccagtccccgaa
attcaacggactaatcttggaaacgtcgtgttgttacttaagtcgcttaacgtcgaaaac
ttactggatttcgacttcatggacccaccgccgcaagataatattgttaactcgatgtac
cagctgtgggttttgggtgcattgagcaacacaggtagtttaacgaatgtcgggtggaag
atggtcgagttcccactcgatccaccattagccaaaatgcttctaataggagaacggttt
aaatgtctaaacgaagttgttacaatcatctcgatgctttcggtcccgtccgtatttttc
cgacccaaagaccgagcaaaggaaagtgatgacgctagagagaagttcttcgtgtcggaa
tccgaccatttaacgttactgaacgtataccaacagtggaaagctaacgaataccgcgga
gactggtgtaacgatcactatctacaattaaaggcgcttcaaaaagcccgggaggttcga
tcgcaactgttagacatattaaaaacgctaaagattgggctgtcctcatgcgggccaaat
tgggatattgtacggaaagcaatctgttcgacttattttcataacgctgcaagaatgaaa
ggtgtgggggaatatgtgaactgtcggaacggaatgccgtgccatctgcacccgagctcg
gctctttacgggtcgggggacatgccggattatgtggtgtaccatgagcttatactgacg
acgaaagaatacatgcaatgtgtgacttgtgtcgacccacggtggttagctgaactgggg
ccgatgtttttctcggttaaggattcggatacatcgatgttggaacaaacaaagaagcga
aaagacgagaagtcggtcatggaagaggaaatcgagaggttgataaaagaagaggcggaa
gcagagatgagaaaaaaggcggaggagagggagaagatgaagaaacgacaacagacaatc
tgcatgccgggatggaagcaaggttcttcgacgtatccccaacataaaagaccgggtttg
tga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (24)   
   Pfam (24)   
All databases (57)   

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