KEGG   Helianthus annuus (common sunflower): 110923316
Entry
110923316         CDS       T05101                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03022  Basal transcription factors
han03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    110923316
  09124 Replication and repair
   03420 Nucleotide excision repair
    110923316
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:han03021]
    110923316
   03400 DNA repair and recombination proteins [BR:han03400]
    110923316
Enzymes [BR:han01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     110923316
Transcription machinery [BR:han03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     110923316
DNA repair and recombination proteins [BR:han03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     110923316
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom
Other DBs
NCBI-GeneID: 110923316
NCBI-ProteinID: XP_022023136
Position
17:1285276..1290300
AA seq 767 aa
MGHGENSGRPHKRNKYSSKEDHKAAAFDDEEAYYVEDFNDDDRDGDGEGKKRDFTKLELK
PDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
VGLETETIIAVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKKNRYLVESPFPEVLKRL
LSDEVISRARIFNEGGDGFNVSRAIGEIEGTHDELLNEAQLAAVAEEKEAHSFEIDPSQV
ENVKQRCLPNALNYPMLEEYDFRNDTINPDLEMELKPQAQPRPYQEKSLSKMFGNGRARS
GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSNIRDENICRFTSD
SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
ISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
MKLRKPMIYGATSHIERTKILEAFKTSKEVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
RRQEAQRLGRILRAKGRLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
FKVITSLPPSDAGSELSYHRLEDQLSLLGKVLSAGDDKLGLEILEDDTDDIALQKARARR
LMGSMSAMSGAKGMVYHEFRTGQKGGFGKSKPKDPAKRHQLFKKRFV
NT seq 2304 nt   +upstreamnt  +downstreamnt
atgggtcacggtgagaacagtgggagacctcataagaggaacaaatattcatccaaggag
gatcataaagctgcagcttttgatgatgaagaagcatattatgttgaggactttaatgat
gatgatcgagatggtgatggagaaggaaagaagagagattttacaaagctggaacttaaa
ccagatcatgccaatcgcccgttatgggcgtgtgcggatggacggatctttcttgagacg
ttttcgccgttgtataaacaagcatatgattttcttattgctatcgcagaacctgtctgc
aggcctgaatcgatgcatgagtacaacctcactccgcactcactttatgccgccgtatct
gtcggtttagaaaccgaaacaatcattgctgttttgaacaagctttcgaaaaccaagctt
ccaaaagagatgattgagtttattcacgcttctacagcaaattacgggaaagtaaagctt
gtacttaagaagaatcgatacttagttgaatctccattccctgaggtattgaagagattg
ttaagtgatgaagtgatatcgcgagcgaggatttttaacgagggaggagatggattcaat
gttagtagagcgattggtgaaattgaaggtacacatgacgagttgctaaatgaagcacag
ctggcggctgtagctgaagaaaaagaagctcattcttttgaaattgatccttctcaggtg
gaaaatgtaaagcagagatgcttgccaaatgctttaaactatcccatgttggaagaatat
gatttccgcaatgacactatcaatccagaccttgagatggaactaaaaccgcaagcacaa
ccacggccttatcaagaaaagagtcttagcaagatgtttggaaacggcagagcaagatct
ggcatcatcgtcttaccctgtggtgccggaaagtcattagtgggtgtttctgcagcctgc
agaataaagaaaagttgtctctgtttagcaacgaatgctgtgtcggttgaccaatgggcc
tttcagttcaaactatggtcaaacattcgggatgaaaacatttgtcgttttacatccgat
agcaaagaaagatttcgtggaaacgctggagttgttgtgacgacctataacatggttgct
tttggcgggaaacgatctgaagaatccgaaaagatcatcgaggaaatacgaaaccgagaa
tggggtttgctactcatggacgaggtgcacgtggttcctgcacacatgtttcgtaaagtc
attagcatcactaaatctcattgcaagcttgggcttactgctacacttgttagagaggac
gaaagaattacggatttgaattttcttatcggtccgaagttgtatgaagcaaattggttg
gatttagtcaagggcggattcatcgcaaacgtacaatgtgccgaagtgtggtgtccgatg
accaaagagttttttgctgaatatttaaagaaggaaaattctaagaagaaacaggctcta
tatgtgatgaaccctaacaagtttagagcttgcgaatttcttattagatttcatgagcag
caacgtggcgataagataattgtttttgccgacaatcttttcgcactcactgaatacgca
atgaaacttcgcaaaccgatgatttatggtgccacaagtcatattgaaagaacaaagata
ctagaggctttcaagactagcaaggaagtcaacactgttttcctctcgaaggttggtgat
aattcgatcgatattcctgaagcaaatgtgattattcaaatttcatcacatgctggttca
aggcgtcaagaagcccaacgtctcggacgtattctcagggcaaagggtcgtctccaggat
agaatggcgggaggaaaagaggaatacaacgcctttttctactcgctagtatctacagat
acacaggaaatgtattactcaactaaaaggcagcagtttctaatcgatcagggttacagt
tttaaggtgattacaagtttgcctccatcagatgcagggtcagagttgagctatcatcgt
ttagaagatcaactttctcttcttggaaaggtgttaagtgctggagatgataaattaggt
ttggaaatactggaagatgatacagatgacatagcacttcaaaaggcgcgtgcacgtcgc
ctcatgggttccatgagtgccatgtcaggagctaaagggatggtctatcatgagttcagg
actggacagaaaggaggcttcggaaagagcaagccgaaggatccagcaaaacgacatcaa
ctgttcaaaaagcgttttgtatga

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