KEGG   Glaesserella parasuis SH0165: HAPS_0476
Entry
HAPS_0476         CDS       T00825                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
hap  Glaesserella parasuis SH0165
Pathway
hap03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hap00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HAPS_0476 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hap03019]
    HAPS_0476 (pnp)
   03016 Transfer RNA biogenesis [BR:hap03016]
    HAPS_0476 (pnp)
Enzymes [BR:hap01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     HAPS_0476 (pnp)
Messenger RNA biogenesis [BR:hap03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     HAPS_0476 (pnp)
Transfer RNA biogenesis [BR:hap03016]
 Prokaryotic type
  tRNA degradation factors
   HAPS_0476 (pnp)
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 KH_2 S1_2 SLS1_KH2 aRib
Other DBs
NCBI-ProteinID: ACL32144
UniProt: B8F492
Position
complement(508956..511085)
AA seq 709 aa
MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTV
DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN
PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAG
TDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTD
LINKVKALAEARLGDAYRITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALE
SQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERD
AQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF
PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI
LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAI
PAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATD
NNAAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVER
VADYLSVGQDVQVKVVEIERQGRIRLTMKDLNGDATAREVVEEIQELAE
NT seq 2130 nt   +upstreamnt  +downstreamnt
atgactccaatcgttaaacaatttaaatacggtcagcataccgtaactttagaaacaggg
gctattgctcgtcaagcaacagcagcagtaatggcaagtatggacgacactaccgttttt
gttaccgttgtggcaaaaaaagaggtgaatgaaggccaagacttcttcccattaactgta
gattatcaagagcgtacttacgcagcaggccgcattccaggtggtttcttcaaacgtgaa
ggtcgtccatctgagggtgaaactttaattgctcgtttaatcgaccgcccggttcgccca
cttttccctgaaggtttcttcaacgaaattcaagtgattgcaacggtggtttctgtcaat
ccacaaatcagcccggatttagtggcgatgatcggtgcttcagctgcattatctttatcc
ggcgtgcctttcaacggcccaatcggtgcagcacgtgttggttttatcgataaccaattc
gttttaaacccaactacatcagaacagcgtttaagccgtttagatttagtggtagctggt
acagacaaagcggtattaatggttgaatctgaagcagatatcttaactgaagaacagatg
ttagccgcagtggtgtttggtcacgaacagcaacaagtggtgattgaaaacatcaaagaa
tttgtgaaagaagcgggcaaaccacgttgggattgggttgctccagagccaaatacagat
ttaatcaataaagttaaagcattagcagaagctcgtctgggcgatgcttaccgtattact
gaaaaacaagcacgttatgaacaaattgacgcaatcaaagctgatgttatcgctcaatta
accgcagaagatgaaaccatttcaagcggcaagattgtagatattattaccgcattagaa
agccaaatcgtgcgtagccgtattatcgcaggcgaaccgcgtattgacggtcgtacagtg
gataccgtgcgtgcattagatatttgcactggcgttttaccacgtactcacggttcagca
ttgtttacccgtggtgaaacacaggcgttagcagttgcgacattaggtacagagcgtgat
gcacaaatcattgacgaattaacaggcgaaaaatcagatcgcttcttattccactacaac
ttccctccatattcagtaggtgaaacaggtcgtatcggttcgccgaaacgtcgtgaaatc
ggtcacggtcgtttagcgaaacgtggtgtgttagcagtaatgccaacggcagaagaattc
ccgtatgttgtgcgtgtggtatctgaaattaccgagtcaaacggttcttcatcaatggct
tctgtatgtggtgcttctcttgcgttaatggacgctggtgtgccaatcaaagcggctgtt
gctggtatcgcaatgggcttagtgaaagaagaagagaaatttgtggtactttcagacatt
ttaggtgatgaagaccacttaggcgatatggactttaaagtagcgggtacccgtgaaggt
gtaactgcattacaaatggacatcaaaattgaagggatcacccctgaaattatgcgtatc
gcattaaatcaagcgaaaggcgcacgtatgcacattttaggtgtgatggaacaagcgatc
cctgcaccacgttcagaaatttctgacttcgcacctcgtattcatacaatgaagatcgat
ccgaagaaaatcaaagatgtgatcggtaaaggtggtgcgacaattcgtgcattaaccgaa
gaaactggcacatcaatcgacattgatgatgacggaacagtgaaaattgcggcaacagac
aacaacgccgcgaaacgtgtgatggaacgtatcgaagagatcgttgcagaagttgaagtc
aatgcgatctacaaaggtaaagtaacccgtgtagtagatttcggtgcattcgtgtctatc
cttggtggtaaagaaggtttagtgcatatttctcaaatcactgacgctcgtgtagaacgt
gttgcggattacctatctgttggtcaagacgttcaggtgaaagtggtagaaatcgagcgt
caaggccgtatccgcttaacaatgaaagatctgaatggtgatgcaactgctagggaagtt
gttgaagaaattcaagaattagcagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (24)   

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