KEGG   Haloplanus rubicundus CBA1112: DU484_18115
Entry
DU484_18115       CDS       T05557                                 
Name
(GenBank) RNB domain-containing ribonuclease
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
haq  Haloplanus rubicundus CBA1112
Pathway
haq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:haq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DU484_18115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:haq03019]
    DU484_18115
   03016 Transfer RNA biogenesis [BR:haq03016]
    DU484_18115
Enzymes [BR:haq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     DU484_18115
Messenger RNA biogenesis [BR:haq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     DU484_18115
Transfer RNA biogenesis [BR:haq03016]
 Prokaryotic type
  tRNA degradation factors
   DU484_18115
SSDB
Motif
Pfam: RNB
Other DBs
NCBI-ProteinID: AXG11615
UniProt: A0A345DYX1
Position
3313616..3314944
AA seq 442 aa
MTNDSDAQAQAGTAEGQGPVEISPAEARQLQEKREDLFEEFEIRDAFPPDVLREARERTE
GVQGEIQDELEHREDLRDLTAWTTDPIDAQDFDDAISVREEEDCYRLWVHIADVTHYVHP
DSAMWEEAVQRGNTVYLPSYTIHMLPPTLAETVCSLVPDEDRLAHTVEMELDPETLSFET
IDIYKSVIRSDERLTYSQCEKRLEDPDAPLHEENTLAFELADRMHEQRKEDGSLVLNPRR
DRAHTIIEECMLKANKAVTHELMWNRGVEAMYRVHPQPTPDQWNDALREIQELNGVSIPS
DKWDDPRKAVNGALETAPDRMLSKIQRAVLKVMPRAKYMNDPFGGHHALNFDIYGHFTSP
IRRLSDLINHWIVHENDVPEDLIELCDRASDRQKDGETVERLYKGFMEEIGLDPYAVNNR
GVVTVDEDGEVVNDEGLPPEED
NT seq 1329 nt   +upstreamnt  +downstreamnt
atgacgaacgattccgacgcgcaggcgcaggccgggacggccgagggccagggaccggtc
gaaatcagcccggccgaggcccgccagttacaggagaaacgcgaggacctgttcgaggag
ttcgagattcgggacgccttcccgcccgacgtcctccgcgaggcacgtgagcgaacggag
ggcgtccaaggagagattcaggacgaactggagcaccgggaggacctccgggacctgacg
gcgtggacgaccgaccccatcgacgcgcaggacttcgacgacgccatcagcgtccgcgag
gaggaggactgctaccggctgtgggtccacatcgcggacgtgacccactacgtccatccc
gactccgcgatgtgggaagaggccgtccagcggggcaatacggtgtatctgccgtcgtac
accatccacatgctcccaccgacgctcgcggagacggtgtgttcgctcgtccccgacgag
gaccgtctcgcccacaccgtcgagatggaactcgaccccgagacgctctcgttcgagacc
atcgacatctacaagtccgtcatccggagcgacgaacgcctcacctacagccagtgtgag
aagcgactggaagaccccgacgcaccgctccacgaggagaacaccctggccttcgagctc
gccgacaggatgcacgaacagcgcaaggaagacgggtcgctcgtcctgaacccccggcgt
gaccgcgcgcacaccatcatcgaggagtgcatgctgaaagcgaacaaggcggtgacccac
gaactgatgtggaaccgcggcgtcgaggcgatgtaccgcgtccacccccagccgacgccg
gaccagtggaacgacgccctccgcgagattcaggaactgaacggcgtctccatcccctcc
gacaagtgggacgacccccggaaggcggtcaacggcgccctcgaaaccgcgcccgaccgg
atgctctcgaagattcagcgtgcggtcctgaaggtgatgccccgcgcgaagtacatgaac
gaccccttcggcggccaccacgccctcaacttcgacatctacggccacttcacctccccc
atccgccgactctccgacctgatcaaccactggatcgtccacgagaacgacgtgcccgag
gatctgatcgaactctgtgaccgggcctccgaccggcagaaggacggcgagacggtcgaa
cgactctacaaggggttcatggaggaaatcggcctcgacccgtacgcggtgaacaaccgc
ggcgtcgtcaccgtcgacgaagacggcgaggtggtaaacgacgaggggctgccgcccgaa
gaggactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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