KEGG   Herminiimonas arsenicoxydans: HEAR3173
Entry
HEAR3173          CDS       T00490                                 

Gene name
rpoB
Definition
(GenBank) DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subunit beta) (RNA polymerase subunit beta)
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
har  Herminiimonas arsenicoxydans
Pathway
har03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:har00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HEAR3173 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:har03021]
    HEAR3173 (rpoB)
   03400 DNA repair and recombination proteins [BR:har03400]
    HEAR3173 (rpoB)
Enzymes [BR:har01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HEAR3173 (rpoB)
Transcription machinery [BR:har03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HEAR3173 (rpoB)
DNA repair and recombination proteins [BR:har03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HEAR3173 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 DNAPolymera_Pol
Other DBs
NCBI-ProteinID: CAL63282
UniProt: A4G9U5
Position
complement(3128612..3132718)
AA seq 1368 aa
MHYSFTEKKRIRKSFAKRANVHNVPFLLATQLESYHDFLQEDKIPSQRKNEGLQSAFTSI
FPIVSHNGFARLEFLSYVLGDPPFNIKECQQRGLTYASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDYEFDPKDILFFRVDRRRKMPVTILLKAIGMTPEQILENFFVFDDFTLHAD
GAEMKFVAERLRGEVARFDITDKAGKVLVAKDKRINSKHVRDVEAAGIKQISVPEDYLLG
RILAKNIVDADTGEVIASANDELTDDLLARLREGKISHIQTLYTNDLDQGGYISQTLRMD
DTNDQMAAKVAIYRMMRPGEPPTEDSVEALFNGLFYNPDRYDLSAVGRMKFNRRIGRDSL
TGDMTLSNEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
EGSKVTDQIDYLSAIEEGRYIIAQANATIDKAGMLSDELVSAREAGETILVSPERVQYMD
VAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSGT
TVQALRGGIVDYIDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVQVG
DRVAKHDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVTAGDTLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDDELQ
RYRLDLNDQLRIVEGDAFQRLEKMLVGKVVNGGPKKIAKGTKITAEYLADLDKYHWFDIR
PSDDTSANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGLRIGEMLNTQVQIAELRKFLAAIYNESGKTEDLDSFSDAEILELASNLKNGVPFAT
PVFDGADEGETRRMLDLAYPDHIAKQLGMTASKNQVTMYDGRTGEAFERTVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERD
NT seq 4107 nt   +upstreamnt  +downstreamnt
atgcactactcatttactgagaaaaagcgcattcgcaaatcattcgcgaaacgtgctaac
gttcacaacgttccgttcctgctggcgacccagctcgagtcgtatcatgactttttgcaa
gaagacaaaataccgtcccaacgcaaaaacgaaggcttgcaatctgccttcacgtctatt
tttcctatcgtttcgcacaatggttttgcgcgtctcgaattcttgtcgtatgtgctcggc
gatccgccgttcaatatcaaggaatgccaacaacgtggattgacgtacgcgtcgcctctg
cgtgctaaggtgcgcctggtgatcctggataaggaatcgccgaccaagccagtcgtcaag
gaaatgaaagaacaggaagtctacatgggcgaattgccgctcatgacttccaccggttct
ttcgtgatcaacggtaccgaacgcgttatcgtgtcgcagctgcatcgttcgccaggcgtg
ttcttcgaacatgatcgcggcaagacgcactcgtccggtaagttgctgttttcggcacgt
atcattccttaccgcggttcatggctggactacgaattcgatccgaaagacattttgttc
ttccgcgtcgatcgtcgtcgcaagatgcctgtcacgatcctgttgaaggcaatcggcatg
acgccggagcaaatccttgaaaacttctttgttttcgatgatttcactctgcatgctgat
ggcgctgaaatgaaatttgtggcggaacgcctgcgcggcgaagtggcccgttttgatatc
accgacaaagccgggaaagtgctggtcgcaaaagacaagcgtatcaacagcaagcacgtg
cgcgatgttgaagctgcaggcatcaagcagatttcggtaccggaagattacctgctgggc
cgcattctggcgaaaaacatcgttgatgcagatactggtgaagtaattgccagcgccaat
gatgaattgacagatgatctgctggcacgtttgcgcgaaggcaaaatcagccacattcag
actctgtataccaacgatctggatcaaggcggctacatctcgcaaaccttgcgtatggac
gacaccaacgaccagatggcggcaaaagtcgcgatctatcgcatgatgcgtccaggcgag
ccgccaaccgaagattcggttgaagcattgttcaacggcttgttctacaacccggatcgt
tacgatctgtcggctgtcggccgcatgaagttcaaccgtcgtatcggccgcgattcgttg
actggcgacatgactttgtctaacgaagacgtgctggccgtgatcaagattctggttgag
ttgcgcaatggtcgcggcgaagtcgatgatatcgatcacctgggtaaccgtcgcgtacgt
tgcgtcggcgaattggctgagaaccaattccgcgccggtctggttcgtgtcgagcgtgct
gtcaaggaacgcctcggccaagccgaagccgacaacctgatgccgcatgacctgatcaac
tccaagcctatctcggccgcgatccgtgaattcttcggttcgtcgcagttgtcgcagttt
atggatcaaaccaatccattgtcggaaatcacgcacaaacgtcgcgtctccgctctcgga
cctggcggtttgactcgtgagcgcgccggctttgaagtgcgtgacgtgcatccgactcac
tacggtcgtgtctgcccgatcgaaacacctgaaggcccgaacattggcctgatcaactcg
ctggcgttgtacgcccgtctgaacgaatacggtttcctggaaactccatatcgtaaagtt
gaaggcagcaaggtcaccgatcagatcgactatctgtccgcgattgaagaaggccgttac
atcatcgctcaggcgaatgcgactatcgataaagctggcatgttgtccgatgaactggtt
tctgcacgtgaagccggcgaaacgatactggtatcgccggaacgcgttcagtatatggac
gttgcgccaggccaggttgtgtcggttgctgcttcgctgattccgttcctcgaacacgat
gatgcgaaccgtgcattgatgggcgccaacatgcaacgtcaggcagttccttgcctgcgt
ccggaaaaagctctggttggtaccggtatcgaacgtaccgttgcagtcgactcgggtact
accgttcaggcattgcgtggcggtatcgttgattacatcgatgcaggccgtgtcgtgatt
cgcgtcaatgacgatgaagcacaagccggtgaagtcggtgttgatatctacaacctgatc
aagtacacccgttcgaaccaaaatacgaacatcaaccaacgtcctatcgtgcaagttggc
gatcgcgttgcaaaacatgacgtcatcgctgacggtgcatcgactgacttgggcgaactc
gctctgggtcagaacatgctggtcgcgtttatgccatggaacggttacaacttcgaagat
tcgattctgatctctgaaaaagttgtggctgatgaccgttacacctcgattcatatcgaa
gagttgtcggttgttgcacgtgacaccaagctgggcgccgaagaaatcacccgtgatatc
tcgaacctggctgagaaccagctggcgcgtctggatgaatccggtatcgtctacatcggt
gcagaagtcaccgctggcgacactctggtcggtaaagtaacgcctaaaggcgagacccaa
ctgacaccggaagaaaaactgctgcgcgcaattttcggcgaaaaagcatccgacgtaaaa
gatacatcgttgcgcgtaccgtccggtatggtcggcaccgtgatcgacgtgcaagtgttt
acgcgtgaaggtattccgcgcgacaaacgtgcacaacagattatcgacgacgaactgcaa
cgctatcgtttggatttgaacgatcagttgcgtatcgttgaaggtgacgcattccagcgt
ctggaaaaaatgttggtcggcaaggtcgtcaacggcggccccaagaaaatcgccaaaggc
acgaaaatcactgctgagtatttggccgatctggacaaataccactggttcgatattcgt
ccttccgacgacacatcggccaacgccttggaagcgatcaaggaatcgatcgctgaaaaa
cgtcaccagttcgatctggcatttgaagaaaaacgcaagaaactgacgcagggcgatgaa
ttgccgccaggcgtacagaagatggtcaaggtttatctggcagtcaaacgtcgtctgcaa
cccggcgacaagatggcgggtcgtcacggtaacaagggtgtggtatcgcgcattctgcct
atcgaagacatgccgcatatggctgacggtacaccagcggacgtcgtattgaatccgctg
ggcgttccatcccggatgaacgttggtcaggtgctggaagtccatctgggctgggcagct
aaaggtctgggcttgcgtattggcgaaatgctgaacacgcaagtgcagattgccgagttg
cgcaaattcctggctgcaatctataacgagtccggcaagacagaggatctcgatagtttc
agcgatgcagaaattctggaactggcgagcaacctgaagaacggtgtgccattcgcaacg
ccggtgtttgacggtgctgatgaaggcgaaacccgtcgcatgctggatctggcttacccg
gatcacattgccaagcaattgggcatgactgcttccaagaaccaggtcaccatgtatgac
ggtcgtaccggtgaagcgtttgaacgtacagtaaccgtcggttacatgcattacctcaaa
ctgcatcacctggttgatgacaagatgcatgcacgttcgaccggtccttactcgctggtt
acgcaacaaccactgggcggtaaagctcagttcggtggccagcgcttcggtgagatggaa
gtctgggcgctggaagcatacggcgcgtcttacgtcttgcaagagatgttgaccgtcaag
tccgatgacgtgaatggccgtaccaaagtgtacgaaaatctcgtcaagggcgaccacgtc
atcgacgccggcatgccggaatccttcaacgttctcgttaaggaaatccgctcgctgggt
atcgacatcgatctggaacgcgactga

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