KEGG   Helicoverpa armigera (cotton bollworm): 110374975
Entry
110374975         CDS       T05609                                 
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
haw  Helicoverpa armigera (cotton bollworm)
Pathway
haw03008  Ribosome biogenesis in eukaryotes
haw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:haw00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    110374975
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110374975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:haw03019]
    110374975
   03009 Ribosome biogenesis [BR:haw03009]
    110374975
   03016 Transfer RNA biogenesis [BR:haw03016]
    110374975
   03036 Chromosome and associated proteins [BR:haw03036]
    110374975
Messenger RNA biogenesis [BR:haw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     110374975
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     110374975
Ribosome biogenesis [BR:haw03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    110374975
Transfer RNA biogenesis [BR:haw03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    110374975
Chromosome and associated proteins [BR:haw03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    110374975
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D1 XRN1_D2_D3 SH3_12
Other DBs
NCBI-GeneID: 110374975
NCBI-ProteinID: XP_063890311
EnsemblRapid: LOC110374975
Position
4:join(10328498..10328572,10329297..10329523,10330114..10330166,10330784..10330944,10333020..10333184,10333760..10334042,10334443..10334603,10335052..10335156,10335521..10335575,10335711..10335792,10336259..10336451,10336903..10337076,10337327..10337438,10337814..10337992,10338433..10338602,10339044..10339193,10339425..10339492,10339812..10340026,10340363..10340492,10340875..10341002,10341476..10341657,10342515..10342713,10343244..10343503,10344865..10345023,10347324..10347405,10347679..10347750,10348029..10348102,10348360..10348392,10348772..10348874,10349013..10349279,10351115..10351227,10354378..10354477,10355423..10355512)
AA seq 1539 aa
MGVPKFFRYTSERYPCLNELVKQYQIPDFDNMYLDMNGIIHNCSHPDDSNPHFRITEEKI
FQDIFHYLSILFQIIKPKKLFFMAIDGVAPRAKMNQQRGRRFRSAREAEKLEQEAREKGE
VLPTEKRFDSNCITPGTVFMARLHEQLKYFIKYKMSTDPLWSKVKVVLSGHETPGEGEHK
IMDYIRWSRSQPDYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVKFGRSTQRATSP
EETNFYLLHLSLLREYLEQEFISLKSQLPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMH
ISNDALPVLYKTYMTVLPTLDGYINEAGDLNLRRFEVFMQELAKIDKEKFQDTYADLKYF
EAKTGRRPNANERREYKPNNDDTFNVNIEDIKSNKPDDELQALINATQDMFMDDMDNDNE
DEYEETSDEEANMEMEFILHKKDYYMNKLDYSKVTEEVLADQAEGYVRAIQWNLHYYYKG
CPSWCWYYPHHYAPYISDIKGFKDLKIEFELGDPFKPFEQLLAVLPAASKQLLPAPFHDL
MTDEDSPIVHYYPQNFETDLNGKRNDWEAVVLIPFIDEVNLLSAMEPCYQRLTEEEKKRN
SHGPMMVYNWTPQNQGVTLAPDYFPAIPECFAIERQVWRQEIEVPGSMLRRGMLPNAKRD
MLYPGFPTMRHLKYQTSFKKGKVKVFDQPSRNENMIVEIIRDTEQQDSLEKVAQELLGRT
IWVGWPHLTRAKVISVSDEKMRLHYVDKQNNNVNGAPTYTTEANFGNLHKQWISERSTII
EHNMNRLGIELGDVKIIIHAVNLKGFKYMIQDNVSMVQEPEWCSVPCGYAHQAVVKDVRA
HVIQEGGKFSTPQEAYPPGDTVFLLTQGQHYGSLATVVDSESVRSGRIKVMVRERGEPIP
SANAAATPYRTANHAAAACGISAQMMSRITGTVLVVTGERHDMPTEQLNKINIGLNLKFN
KKNLEVSGYTRRCKVTNAWLYSERCIELVKSYEREFPDLFDSLGSGLNRDVYFESDLFPG
EVGKNKAQDIAQWIKAQPHTRALRRECGSEALEPEEMKLLADSLDKQLVDLAGKEKKVTL
QVKWNLLYKPELHCGNISPDPRADFRLYDRVVCVARHMSVPLGAAGTITAVLPPPNTNTV
RLSDKLNADHSYMVMFDKPFPGAMSEDLFDEARFYRLSPNNMLNLSYGRKLRGLSNPAPP
ADSFLPQASPQPNLLRRDDGHHSAFANYSPPADKAVSPDNRNHVANAPPSNGPATQDNAT
HLLRSLLKISETDADNKKPKTTTPEQNRNWRVKNENPLLHPQPPRTPPAFWSLFSGGPPQ
PQNWRKETAPHMNAPRPPPTYTAEWNHTYKSQPPIPPYPTFGQPFQGPGPSQIPFPQFQN
PHFQQRNQFTYRNQDNQRNNQPRTFENPFPKHLPSVGAVGPNVTLGPSWNQPNSQVKTQN
TKPPPPAANKQAAAPAQNNADKVNNPFVPLQVQTSQRRVSQPSGSSNRRDSGQIQAPKST
LPKPQPSNTPIVQQNQDPTPRPIKKKKPRIAANLPFQID
NT seq 4620 nt   +upstreamnt  +downstreamnt
atgggtgtacccaagttcttcaggtacacaagtgagcggtacccttgcctcaacgagctg
gtgaagcagtatcagataccagactttgacaacatgtacttggacatgaatggaattata
cacaactgttcgcatcccgacgactcaaacccacacttccgtataacggaagagaaaata
ttccaggacatattccattacctcagcatactgtttcaaattattaagcctaagaagttg
ttctttatggctattgacggtgtggctccgagggctaagatgaaccagcaaagagggaga
aggtttagatctgcaagggaagcagaaaaattggaacaggaagctagagaaaaaggtgag
gtgctaccgacggagaagcgtttcgacagcaactgcatcacgccgggcaccgtcttcatg
gcgcggctgcacgagcagctcaagtacttcatcaagtacaagatgtccactgaccctctg
tggtccaaggtcaaggttgtgctgtctggacatgagacgccaggagaaggcgaacacaaa
ataatggactacatcagatggtcccgttctcaaccggactacgatcccaacacgagacat
tgtctatacgggcttgatgccgacctcattatgttgggcatgtgtacccatgagccgcac
ttcgccttgcttagagaagaggtaaaattcggcagatcaacacagcgtgctaccagtccc
gaagagactaatttctacctcctacacttatccttactaagagaatatttagaacaagag
tttatttctctgaagtcccagttgccctttccttacgacatagagaagattgtcgatgac
tgggtgctgatggggttcttagtgggcaatgattttattcctaacttgcccaatatgcat
attagtaatgatgccttgcctgttttatataagacttatatgactgtactgcctacttta
gatggttatataaacgaggcaggagatttaaacctgcgtagattcgaggtgttcatgcag
gaactggcgaagatcgacaaggagaagttccaggacacgtacgctgatctcaagtacttt
gaggccaagactgggagacggcctaatgctaacgagaggagagagtacaaacctaacaat
gacgatacgtttaacgtgaatatagaagacatcaagtctaataaaccagacgatgagcta
caagctctaatcaatgctacacaagacatgttcatggatgatatggacaatgataatgaa
gacgagtatgaagaaactagtgacgaggaagcaaatatggaaatggaatttatacttcac
aaaaaggattattacatgaataaattagactattcgaaagtcacagaggaagtgctagcc
gaccaagcagaaggctacgtccgtgctatacagtggaacttgcactactactacaaaggc
tgtccgtcgtggtgctggtactacccccaccactacgccccctatatatcggacatcaaa
gggtttaaggacttgaagattgaatttgagctgggagacccttttaagcctttcgagcag
ttgctagcagtgttgccagcagccagtaaacagttactcccggcgccgttccacgatcta
atgacagatgaagactcgcccatagtgcactactacccacagaactttgagactgatctc
aatggcaagaggaatgattgggaagctgtagtgcttattccttttattgatgaggtgaat
ctactatcggcaatggaaccttgctatcagaggttgacagaagaagagaagaaacgtaac
tcacacggaccaatgatggtctataactggacaccacagaatcaaggagtaaccctagcc
ccggactacttcccggcgataccggaatgcttcgcgatcgagagacaggtgtggagacag
gagatcgaagtccccggcagtatgctgcgaagagggatgcttcccaatgccaagagagac
atgttgtatcctggatttcctaccatgaggcatttgaagtatcagacaagcttcaagaaa
ggcaaagtaaaagtgttcgaccagccatctcgcaacgagaacatgatcgtcgagataatc
cgcgacactgaacaacaggactccctggagaaagttgcgcaagagttgctcggacgcacg
atttgggtcggatggccacatcttactagggctaaagtaatatcagtatcagacgagaag
atgcgtttacactacgtagataaacagaacaacaacgtgaatggggctcctacctacacc
actgaggctaacttcggtaacctgcacaaacagtggattagcgagagatctactattatt
gaacacaatatgaatcgtcttggaatcgaattgggagatgtgaagattatcatccacgca
gtcaatttgaaagggtttaaatacatgatccaagacaacgtatcaatggtccaggagccg
gagtggtgcagtgttccctgtggctacgcgcaccaggccgtggtgaaggacgtgcgggca
cacgtcatacaggagggcggcaagttcagcacgccgcaggaggcatacccgcccggggac
actgtgttcttgctgactcagggacagcattacgggagtctggctacggtggtagactcg
gagtctgtcagatcgggtcgtatcaaggtgatggtgcgtgagcgcggcgagccgatcccg
tcagccaacgccgccgccacgccgtaccgcaccgccaaccatgccgccgctgcttgcggt
atatcagcacagatgatgtcccgcatcacgggcacagtgctggtggtgacgggcgagcga
cacgacatgcccactgaacagctcaacaagatcaacataggattgaacctcaagtttaat
aagaagaatttggaagtatcaggctacactcgacgctgtaaagtaaccaacgcatggctg
tactcggagcgatgcatcgagctcgtcaagtcgtacgagcgagagttcccggacctgttc
gatagtttgggctcgggacttaatagagacgtttactttgaaagtgatttgttccctggt
gaagttggcaaaaacaaggcccaagacatagcccaatggataaaagcgcagccccacact
agggctttgcgtcgtgaatgtggctccgaagccctagagcctgaggagatgaagttacta
gctgatagcctggacaaacagctggtggacctcgccggcaaggagaagaaggtcaccttg
caggttaaatggaacctgctttataagccggagctccactgcggcaacatatccccggac
cctcgcgccgacttccgcctctacgaccgcgtcgtctgcgtcgctcgccacatgtccgtg
ccgctcggcgctgccggcaccatcaccgcagtgctacccccgcctaacaccaacactgtc
cggctgtcggacaaactgaatgccgatcattcgtacatggtgatgttcgataaacccttc
cctggggctatgagtgaagatctctttgatgaggctagattttatcgattatccccaaac
aacatgctgaacttatcgtacggacgcaaactccgcgggctgtcgaacccggcgccgccg
gccgacagcttcctgccgcaagccagcccgcagcccaacctgctgcgccgcgatgacgga
caccactccgccttcgctaactatagccctccggcagataaggccgtgtctccggacaat
cgcaaccacgtcgccaacgccccgcctagcaacggtccggccacacaggacaatgccaca
catttacttagaagcttgctgaagatcagcgaaacagatgctgacaataagaaacctaag
acgacaacgccagaacagaatcgcaattggcgcgtcaagaatgagaacccactgcttcac
ccacaaccgccgcgcaccccacctgcgttttggagtttattttctggagggccgccgcag
ccgcagaactggcgcaaggagacggcgccgcacatgaacgcgccgcgaccaccgcccacc
tacaccgcggaatggaaccacacctataagagtcaaccgcccatccctccatacccaacc
ttcggccagcctttccaaggtccaggtcccagccagatcccgttcccccagttccaaaac
cctcacttccaacagcgcaaccagttcacataccgcaaccaggacaaccagcgcaacaac
cagccgagaacgttcgagaaccccttccccaaacatttgccgagcgttggcgccgttgga
cccaatgtcacgttggggccaagttggaaccaacctaatagtcaggttaaaacacagaac
acaaagccaccgccgcctgccgccaacaaacaggccgctgcgcccgcgcagaacaacgcc
gacaaagtcaacaatcccttcgtgccgctacaagtgcagactagtcagagacgcgtgtca
cagccgagcggttcatccaacagacgggactcgggacagattcaggctcccaagtcgaca
ttaccgaagccacagccttctaacacacccattgtacaacaaaaccaggatccgacaccg
cggcctataaagaagaaaaagcccagaatagcggccaacctgcctttccaaatagactaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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