KEGG   Hevea brasiliensis (rubber tree): 110669288Help
Entry
110669288         CDS       T05150                                 

Definition
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
hbr  Hevea brasiliensis (rubber tree)
Pathway
hbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110669288
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hbr03041]
    110669288
Enzymes [BR:hbr01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     110669288
Spliceosome [BR:hbr03041]
 Complex C
  Other components
   Step II factors
    110669288
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: OB_NTP_bind HA2 Helicase_C S1 DEAD AAA_22 AAA_19 AAA_30 T2SSE DUF2075 ABC_tran Sigma54_activ_2 AAA_16 PhoH Flavi_DEAD
Motif
Other DBs
NCBI-GeneID: 110669288
NCBI-ProteinID: XP_021686563
Position
Unknown
AA seq 1189 aa AA seqDB search
MATTTQTRDNDGLKKLEYLSLVSKVCTELETHLGFGDKVLAEFITELGRNCETVDEFDSK
LKENGAEMPDYFVRTLLTIIHAILPPKPKSGKESKNKDPTSLSDAKNSKFRALAIADSKE
RAKNLERELEMEARERRKEEEKEEDDRNRDRDRRGKDRDRHRDRSDRDERRRDRDYDVGH
DSRDGDYRSRGKQRGRHDRHRRNGSEENDYHDRDGGESERDRRNGPNSSSEPELYKVYKG
RVSRVMDSGCFVQLNDFRSKEGLVHVSQIANRRVGNAKDVVKRDLEVYVKVISISGQKLS
LSMRDVDQNTGKDLLRLKRSSDDDDGTFRTNPSASKEGPVTRTGLSGIRIMEEDDAVPSR
RPLKRMSSPERWEAKQLIASGVLSVKEYPMYDEERDGMLYQEEGAEEDLEIELNEDEPAF
LQGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRP
WEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIYK
LKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKR
VAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVVMLDEAHE
RTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYT
KQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELII
LPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQ
GLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGFTT
LTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPL
SKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVY
EAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITA
GFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVID
PKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq 3570 nt NT seq  +upstreamnt  +downstreamnt
atggctaccacaacacaaacacgagacaacgatggccttaagaaactggaatacttatca
ctcgtatctaaggtttgcacggagctcgaaactcacttagggtttggggacaaagtattg
gcggagttcatcaccgaattaggccgaaattgtgagacagtagatgaatttgattccaag
ttgaaggaaaacggtgccgagatgcccgattactttgtccgcacattactaactatcatt
catgccatccttccgcccaagcccaagtctggtaaggaatccaagaataaagaccccact
tctctctctgacgctaaaaattccaaattcagagctctggctattgcagacagtaaggag
agagccaagaaccttgaacgcgaactcgaaatggaggctagggagagaaggaaagaagag
gaaaaggaagaggacgataggaacagagacagagaccggaggggtaaggatagagacagg
catagggatagatctgatagagatgagaggcgtagagatagagattatgatgttggtcat
gacagtagagatggtgattataggagtagaggaaagcagaggggtaggcatgacaggcat
aggagaaatgggagtgaagaaaatgattatcatgacagggacggtggtgaaagcgaaagg
gatcggaggaacggacccaatagttccagtgagcctgaattgtacaaggtttataagggc
agggtgtcgagagtgatggactcaggttgttttgtgcaattgaatgactttaggagcaag
gagggtttggttcatgtttcacagattgcaaataggagggttggtaatgccaaggatgtt
gtgaagcgggacctggaggtttatgttaaggtgatttcaatttccggacagaagttgagt
ctttccatgagggatgttgatcagaatacaggtaaggatctacttcgtttgaagaggagc
tcagatgatgatgatggtacttttaggactaatccttcggcatctaaggaggggccagtg
accaggacagggctttctgggattaggatcatggaggaggatgatgcggttccatcgcgt
cggccattgaagagaatgagctcaccggagagatgggaggcaaaacagttgattgcttct
ggagttttaagtgtcaaagagtatcccatgtatgatgaagagcgagatgggatgctttat
caagaagagggcgctgaggaggatcttgaaattgagttgaatgaagatgagcctgcattt
ttgcaaggccagactaggtactctgttgatatgtctcccgtgaagatttttaagaatcca
gaaggatcattgagtcgtgcagctgcgcttcagtctgcacttataaaggagaggagggaa
gtaagggaacaacagcagaggacgatgcttgattcaataccgaaggatcttaatcgtcct
tgggaagacccaatgcctgagactggtgagaggcatctcgctcaggagcttagaggagtt
ggtttatcggcttatgacatgcctgagtggaagaaggatgcatttggaaaagctttaaca
tttggccaaagatcaaagttatccattcaggagcagaggcagagcttgccaatctataaa
ttgaaaaaagagctaattcaagctgtccatgataatcaggttctggtagttattggtgag
acaggctcaggtaagactacccaggtgacacagtatcttgccgaggcaggttataccacg
aagggtaagattggatgtactcagcctcgtcgggtggctgcaatgtctgtggccaagagg
gtggctgaagagtttgggtgtcgtttaggggaggaggttggttatgccattcgttttgag
gattgtactggaccagatacagtgatcaagtacatgacagatggcatgctacttagggag
attctgattgatgataatctttctcaatattcagtggtaatgcttgatgaagctcatgag
aggacaatccacactgatgtcctttttgggttacttaaacagcttgtaaagaggagacct
gatcttcgcttgattgtcacatctgccacactagatgctgagaaattttcaggatatttc
ttcaactgtaacatattcacaattcctgggagaacttttcctgtggagatattgtacacc
aaacagccagaaagtgactatttagatgcagctttgatcactgtgctacaaatccacttg
acagaacctgaaggtgacatacttcttttcttgactggtcaggaggagattgattttgca
tgccaatctctctatgagaggatgaaaggtttgggaaaaaatgttccggagttgattata
ttacctgtttatagtgcccttcccagtgaaatgcagtccaggatttttgaacctgcccca
ccagggaagaggaaggttgttgtggcaaccaatattgctgaggcttcactgacaattgat
gggattttttatgttattgatcctgggtttgcaaagcagaatgtatataatccaaagcag
gggcttgattctctggttataacgccaatttcacaagcatctgccaagcagcgggctgga
agagctgggcgtactgggcctggaaagtgttatcgtctgtacactgaaagtgcataccgt
aatgagatgtccccaaccacaattccagaaattcaaagaataaatcttggatttactaca
ctcacaatgaaggcaatgggaattaatgatctcttgtcttttgattttatggatccacct
tcaccacaggccctcatatctgccatggaacagttatacagtctaggagctctggatgaa
gagggccttctgaccaaattgggaaggaaaatggctgaatttcctctggatccaccattg
tccaagatgttgttggcaagtgtagatcttgggtgcagtgatgagattttgactattatt
gccatgatccaaactggtaacatattctacaggcctagggaaaaacaagctcaagcagat
cagaagagggccaagtttttccagcctgagggagaccatttgaccttactcgctgtatat
gaggcttggaaagctaagaacttttcagggccttggtgttttgagaattttgttcagtcc
agatccttgaggagggcacaggatgttaggaaacagcttctctcaatcatggataaatac
aaattggatgttgtgagtgctggaaagaatttcacgaagataagaaaagcaatcacagct
ggattcttctttcatgctgctagaaaggatccacaggagggttatcggaccctagttgag
aaccaacctgtttatatacacccgagcagtgctctttttcagagacaaccagactgggtc
atctaccatgaactggtaatgactacaaaggagtacatgcgcgaggtgactgttatagat
cccaaatggcttgtggaactggcaccgaggttctttaaggtggcagatcctacaaaaatg
agcaagaggaaacgtcaagaacggatcgagccactatatgacagataccatgaacctaat
tcatggcgattgagtaaacggcgagcgtga

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