KEGG   Hyperthermus butylicus: Hbut_0570Help
Entry
Hbut_0570         CDS       T00468                                 

Definition
(GenBank) predicted RNA binding protein Rrp4
  KO
K03679  exosome complex component RRP4
Organism
hbu  Hyperthermus butylicus
Pathway
hbu03018  RNA degradation
Module
hbu_M00390  Exosome, archaea
Brite
KEGG Orthology (KO) [BR:hbu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hbut_0570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA Biogenesis [BR:hbu03019]
    Hbut_0570
Messenger RNA biogenesis [BR:hbu03019]
 Eukaryotic Type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Hbut_0570
 Prokaryotic Type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     Hbut_0570
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: KH_1 KH_6 KH_2
Motif
Other DBs
NCBI-ProteinID: ABM80430
UniProt: A2BKB9
Position
542242..542961
Genome map
AA seq 239 aa AA seqDB search
MARIYVQNRSIVVPGDLLAEGEDVVVESIFVERVGLKYYATITGLANVQQEDGKFKVSII
PLEGAYIPRPGDIVIGLVRDIGLTHWEVDIASPYKGILTVQEVLDRPFNPATDSLKKYLD
VGDYIVAKIVAFDRARDPLLTIKGKGLGRIVEGSIVEIKPSRVPRVIGKKGSMVNMIMQE
TGCEVLVGQNGRILVKCPNRELEEIVVLSIKKIEAEAHTTGLTERVREFIRRERSRRGV
NT seq 720 nt NT seq  +upstreamnt  +downstreamnt
ttggccaggatatatgtgcagaataggagcatagttgtgccgggggatctcctggctgag
ggcgaggatgtggtagtggagtccatctttgttgagcgtgtaggtctaaagtactacgct
actataactgggcttgccaatgtacagcaggaggatggcaagttcaaggtatccattata
ccactcgagggagcctacataccccgcccaggcgacatagttatagggcttgtaagggat
atagggctcactcattgggaggtagacatcgcctcgccctacaagggcatactcactgtg
caggaggtactagatcgcccctttaaccccgcaaccgatagcctgaagaagtacctcgat
gtaggcgactacattgtcgccaagatagtagcttttgaccgcgcaagggatccattacta
acaatcaagggtaaggggctcggccgcatagtcgagggctccattgtcgagattaagccc
agccgtgtacccagggttataggtaagaagggctcaatggtgaacatgattatgcaggag
actggctgcgaggtactcgtgggccagaatgggaggatactagttaaatgccctaatcgg
gagcttgaagagatagtagtactctcaataaagaagattgaagccgaggctcatacaacg
gggctcactgaaagggttagggagttcattaggagggagaggagtaggagaggtgtataa

DBGET integrated database retrieval system