KEGG   Hahella chejuensis: HCH_04977
Entry
HCH_04977         CDS       T00307                                 
Symbol
ihfB
Name
(GenBank) integration host factor, beta subunit
  KO
K05788  integration host factor subunit beta
Organism
hch  Hahella chejuensis
Brite
KEGG Orthology (KO) [BR:hch00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hch03032]
    HCH_04977 (ihfB)
   03036 Chromosome and associated proteins [BR:hch03036]
    HCH_04977 (ihfB)
   03400 DNA repair and recombination proteins [BR:hch03400]
    HCH_04977 (ihfB)
DNA replication proteins [BR:hch03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    HCH_04977 (ihfB)
Chromosome and associated proteins [BR:hch03036]
 Prokaryotic type
  Nucleoid associated proteins
   IHF (integration host factor)
    HCH_04977 (ihfB)
DNA repair and recombination proteins [BR:hch03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      HCH_04977 (ihfB)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_euk_1 HU-CCDC81_bac_2 HU-CCDC81_euk_2 Ribosomal_L11
Other DBs
NCBI-ProteinID: ABC31667
UniProt: Q2SCF7
Position
complement(5114855..5115151)
AA seq 98 aa
MTKSELVEIIAQKQPQLSIKDVELAVKTIIEYMSQSLSQGQRIEIRGFGSFSLHYRAPRV
GRNPKTGETVHLPAKYVPHFKPGKELRDEVNASLKAGY
NT seq 297 nt   +upstreamnt  +downstreamnt
atgaccaaatcagagttagtcgagattattgcgcaaaaacaaccacaactttcgataaaa
gacgttgagctcgcggttaaaacgatcatagagtacatgtcacaatctctgtcccagggg
cagcgtatagaaatacggggattcggcagtttcagtctccactatcgcgctccacgggta
gggcgaaatcccaaaacaggtgagactgttcatcttcctgcgaagtatgtgccgcacttc
aagcctggtaaggaattgagagatgaggttaacgcaagtctcaaagccggatattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

Download RDF
DBGET integrated database retrieval system