KEGG   Hahella chejuensis: HCH_06224
Entry
HCH_06224         CDS       T00307                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
hch  Hahella chejuensis
Pathway
hch03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hch00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HCH_06224 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hch03021]
    HCH_06224 (rpoB)
   03400 DNA repair and recombination proteins [BR:hch03400]
    HCH_06224 (rpoB)
Enzymes [BR:hch01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HCH_06224 (rpoB)
Transcription machinery [BR:hch03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HCH_06224 (rpoB)
DNA repair and recombination proteins [BR:hch03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HCH_06224 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 7TMR-HDED
Other DBs
NCBI-ProteinID: ABC32869
UniProt: Q2S905
Position
complement(6354390..6358463)
AA seq 1357 aa
MTYSYTEKKRIRKDFGKLPAVMDVPYLLSIQLDSYHDFLQQDVAIEDRQEVGLHAAFKSV
FPIVSFSGNAALEYVSYRLGQPVFDVAECQLRGVTYAAPLRVKVRLIIYDKESSTKAIKD
IKEQEVYMGEVPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPATILLRALGYAADEMLEMFFENSLFEVEGGE
YFLDLVPSRLRGDIAIFEIKDDEGNLIVEEGRRVTARHIRQMEKAGLKRLRVPSSYLLGK
VTATNIADPSTGEVIVECNTEITDDAIEKIEKAGIKRIETLYTNDLDCGPFVSDTLRIDA
TRSQLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSAVGRMKFNRRLGREETE
GLGVLSHSDIIDVLRTLIDIRNGKGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNTYGFLESPYRKVV
DGLVTDDIEYLSAIEESDYVIAQASAAVDENGRLIDELVTVRHKNEFTVMPPEKVTLMDV
SPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKAEKPLVGTGMERYVAQDSGVC
VVARRGGVVVSVDAARIVVRVSDDETEAGDAGVDIYNLTKYQRSNQNTCINQRSLVMEGD
EVARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEVTADIPNVGESALAKLDDSGIIYIGAEVEPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVSTGMRGTVIDVQVFTRDGVEKDQRAKEIEQTELNK
FRKDLNDEYKIVEGATFERLRSALLGQSVIGGPGLKKGDTLTEVHFNAFEKEEWFKLNMA
DEQLNELLEKAEGQLQERRKSIEDRYEDKKRKLQSGDDLAPGVLKIVKVYVAVKRRIQPG
DKMAGRHGNKGVISAIKPVEDMPYDEQGNPVDIVLNPLGVPSRMNVGQVLETHLGAAAKG
LGDKINRMLAEQKQAAEIRKFLHEIYNGIGGRNEDLDSLSDSEVLVLAANLKKGVPMATP
VFDGAKEKEIKEMLRLADMDDSGQVWLYDGRTGERFERQVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELEAN
NT seq 4074 nt   +upstreamnt  +downstreamnt
atgacatactcctataccgagaaaaaacgaattcgtaaagacttcggaaagcttccagca
gtaatggacgttccgtacctcctgtccatacagctagactcctatcatgattttttacag
caagacgtagcaatcgaagaccggcaggaagtcggcttgcacgctgcgttcaagtcggta
tttccaattgtcagcttttcgggaaatgcggccctagaatatgtaagttaccggctgggc
cagcccgtatttgatgtagctgagtgtcagctgcgcggcgttacctatgcggcgccctta
agagttaaagttcgcttgatcatctatgacaaagaatcgtctacgaaggcgattaaagat
atcaaggaacaagaagtttatatgggagaagttccgttaatgaccgaaaacggaactttc
gttatcaatgggactgagcgtgtcatcgtatctcagctccatagatctccaggcgtattt
tttgatcacgataaaggcaagactcactcctccggcaaattgctttattcggcgcggatc
attccttatcgcggatcttggcttgacttcgagttcgatccgaaggattgcgtgttcgtt
cgtatagaccgtcgtagaaagctgccggcgacaatacttttgcgcgccttgggatacgcc
gctgacgaaatgctcgaaatgttcttcgagaacagtctgtttgaagtagagggcggcgaa
tacttcctggatttggttcctagccgtctgcgtggtgatatcgccatctttgaaattaaa
gatgacgagggcaacctaatcgtagaagaagggcgtagggttacagccagacatattcga
caaatggaaaaggcgggcctaaaacgtctgcgtgttccaagctcctatttattaggcaaa
gttactgcaactaatatcgctgacccttcaactggggaagtgattgttgagtgtaatact
gagattactgacgacgctatcgagaagattgaaaaagcgggcatcaagagaattgaaacg
ctttataccaacgacttggattgtggccccttcgtttccgatacgctaagaattgatgcg
acgcgttcacagttagaagctttggtcgaaatttatcgcatgatgcgcccaggtgagccg
ccgacaaaagagtcagcggaaaatctgttcaacaacctgtttttttcagaagagcgttat
gatctttccgctgttgggcgcatgaagttcaaccgcagattggggcgcgaagaaacagaa
gggctgggcgttctgagtcattcagatattattgacgttttgaggacgttgatcgatatc
cgtaatggtaaaggcgttgtggatgatatcgatcatcttggtaaccgtcgtgtgcgttct
gtcggtgagatggccgagaatcagttccgtgtagggctggttcgcgttgagcgtgcggtg
aaagagcgtctgagcatggcggagtctgaggggcttatgcctcaggacctgatcaacgcc
aagccagttgctgcagctgtaaaggagtttttcggatccagtcagttgtctcagtttatg
gatcagaataaccctctgtctgaagtaacgcataagcgtcgtgtttctgcgttgggacct
ggtggtttgacgcgcgagcgcgctggctttgaagtgcgcgacgtacacccgactcactat
ggtcgtgtttgtcctattgagacgcctgaaggtccaaacatcggtctgatcaactcactg
gccacatacgcccgcacaaatacctacggcttcctggaaagtccgtatcgtaaggtcgtg
gacggcttggtgactgacgatattgagtatctgtctgctattgaagagagcgactacgtt
attgcacaggcaagcgcggcagttgacgaaaacggtcgcttgattgacgagttggtaaca
gttcgtcataagaacgagtttaccgtaatgccgcctgaaaaagtgacgttgatggatgta
tcacctcgtcaggttgtatctgtggcggcgtctctgatcccgttcttggagcacgatgat
gctaaccgagcattgatgggatcgaacatgcagcgacaggctgtccctacgctgaaggcg
gaaaagcctctggttggtacaggtatggagcgttatgtggcccaggactccggcgtgtgc
gtggttgcgcggcgcggtggggttgttgttagcgttgacgctgctcgtatcgttgttcgt
gtgagcgatgatgaaaccgaagccggcgacgctggggttgatatctataacctcactaag
taccagcgctccaaccagaacacctgcatcaaccagcgctctctggtgatggaaggtgac
gaagttgcgcgtggcgatgtgcttgctgatggtccatctgttgacttgggggaactggcg
ctggggcagaacatgcgcatcgcgtttatgccttggaatggttacaacttcgaggactcc
atccttgtgtctgagagagttgtacaggaggaccgattcaccacgattcatatccaggag
ctcacttgcgttgcaagggataccaagctagggccggaagaagttacagcggatattccc
aatgtgggcgaaagcgcgttggcgaaattggatgactccggaattatctatattggagcg
gaagttgagccaggcgacattctggtcggcaaagtgacgccgaagggtgaaactcagttg
acgccagaagaaaaactgctgcgcgctatctttggtgagaaagcctctgatgtgaaggat
acttccctgcgcgtatcgactggtatgcgcggaacagttattgatgttcaagtgtttacc
cgcgatggcgttgagaaagatcagcgcgcgaaggaaatcgaacaaactgaactgaataag
ttccgcaaggacctaaacgatgagtataaaatcgttgaaggcgcaacgttcgagcgcttg
cggtcggcattgctgggccagtcagtaattggcggtcctggtctgaagaaaggcgatact
ctgactgaagttcacttcaacgcattcgagaaagaagaatggttcaagttgaacatggcg
gacgaacaactgaatgaactgcttgaaaaggcggaagggcagttgcaagagcgtcgtaag
agtatcgaagaccgttacgaagataaaaagcgcaagttgcagtctggcgatgacttggct
ccaggcgttttgaaaatcgtcaaggtctatgttgctgtgaagcgtcgtattcagcctggt
gacaaaatggcgggaagacacgggaacaaaggtgttatttctgcgatcaagccagttgaa
gatatgccttacgatgagcagggcaacccggtcgatatcgtattgaacccgttgggcgta
ccgtcccgtatgaacgtgggacaggttcttgagactcatttgggcgcagcggcgaaaggg
cttggtgataaaatcaacaggatgctggcggagcagaagcaagccgcggaaattcgcaag
ttcctgcacgagatctataacgggattggcggacgcaacgaagatttggactcattgtct
gactccgaagttctggtcttggcggccaacctgaagaaaggcgtgcctatggctacacct
gttttcgatggcgccaaagagaaagaaatcaaagagatgctgcgtcttgcggacatggat
gatagcgggcaggtctggctgtatgacggtcgtaccggtgagcgcttcgaacgtcaagta
actgtgggctatatgtacatgctgaagttgaaccatttggtcgacgataaaatgcatgct
cgttctaccggctcttacagtttggttacgcagcagccgttgggcggtaaagcccagttc
ggtggacaaaggttcggggaaatggaggtctgggcactggaagcatatggcgcagcgtat
acgttgcaggaaatgcttacggttaaatccgatgacgttaatggtcgtacgaagatgtac
aagaacatcgtagacggcgatcaccgtatggagccgggtatgccagagtcctttaacgta
ttggttaaagagatccgctctttgggtatcgatatcgaactcgaggccaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (95)   
   KEGG ORTHOLOGY (1)   
   RefGene (92)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (111)   

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