KEGG   Helicobacter pylori HUP-B14: HPB14_04435
Entry
HPB14_04435       CDS       T02035                                 
Name
(GenBank) Rep helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
hcn  Helicobacter pylori HUP-B14
Pathway
hcn03420  Nucleotide excision repair
hcn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hcn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HPB14_04435
   03430 Mismatch repair
    HPB14_04435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hcn03400]
    HPB14_04435
Enzymes [BR:hcn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HPB14_04435
DNA repair and recombination proteins [BR:hcn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HPB14_04435
   MMR (mismatch excision repair)
    Other MMR factors
     HPB14_04435
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_12 Viral_helicase1 AAA_11 AAA_30 DEAD ResIII
Other DBs
NCBI-ProteinID: AFI07578
Position
917328..919355
AA seq 675 aa
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTN
KASNEMIARVAKYFKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN
AIDDDKKPYTSQHLYTLYSLYTNALKQEDFSAWLSHKNPEHTPYAALYENILDEFENTKK
KHNYIDYNDLLLLFKKAMLERSSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQ
SIYAFNGADISIISNFTQKYKNARVFTLTKNYRSSKEILDLANQVIQCNERIYPKNLEVV
KSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRFHNVPS
KRKGSASFFESKEVALALDICALLFNPKDIMAAIHILSCISDIGSNTAKDIHEALMLLGN
GDLKSALIQPSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSMIDKAFHSHPVLMHPKI
SLNGAKMLSDFFILYTKAPIHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKK
LQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGCGVNLLSVHASKGLEFKDV
YIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKP
SVFLYEAGLLKPDSK
NT seq 2028 nt   +upstreamnt  +downstreamnt
ttgttagaaactttgcaattaaaccctgagcaactaaaagcggccaaggctttgaaaggg
tataatttagtgattgcgagcgctggcacgggaaaaacttctaccattgtggggcgcatt
ttacacctgctagataacggcatcaagcctgaagaaatcttgcttttgactttcaccaat
aaagcgagtaatgaaatgatcgctagggtggctaaatattttaaattaagctccaaaatt
gaagcgggtactttccatgcggtagcgtatcgctatttaaaagagcattaccctaattta
agcctgaagcaacctaaggaactaagaaaacttttagaaagcattgtggacactaaaaac
gccatagatgacgataaaaagccctacacttcgcagcatttatacaccctttattcgctt
tacactaacgctctaaaacaagaagattttagtgcatggctttctcataaaaaccctgaa
cacacgccatacgccgccctttatgaaaacattttagacgaatttgaaaacaccaaaaaa
aagcataattatattgactataacgacttgctgctgctgtttaaaaaagcgatgctagaa
agatctagcccttataaagaagtgctttgcgatgagtttcaagacactaaccccttacaa
gaatccattttagacgctatcaaccctcccagtttgttttgcgtgggcgattacgatcag
agcatttacgcttttaacggggcggatatttctatcatttctaatttcactcaaaaatac
aaaaacgcccgagttttcacgctcaccaaaaactaccgctcctctaaagagattttagat
ctcgctaatcaagtgatacagtgcaatgagcgcatttaccctaaaaatttagaagtggtg
aaatcagggaaattcaataaacccacgcttttaaattacaacgacaatatcgcgcaatgc
caagacatcgctaaacgcattgtgatgcggaagaattttaaagaagtggcagtgattttt
aggaataacgcgagcgcggatcaattagaagccgctttaagattccacaatgtgccaagc
aaaaggaaagggagtgcgagcttttttgaatccaaagaagtggcgttagcgttagatatt
tgcgcgctactatttaaccccaaagacattatggcagcgattcacattttaagctgtatc
agtgatattggctctaacaccgctaaagacattcatgaagccttaatgcttttaggcaat
ggcgatctcaaatcagccttaattcagccaagcaaagaagccaaaatttacacgaagaaa
aaagaaatcacctctatggggctttttgaagaaatttttgccctagaaaacagctcaagg
tttaatagcatgatagataaggcgtttcattcgcacccggtgttgatgcaccctaaaatc
tcactcaatggggctaagatgctgagcgattttttcattctctataccaaagcccctatt
cattcccctagcgctttaatcaaacacattctagaaagtgcgttttttcaaacctttaaa
acacgccttttaaaagagcgatctaaaaataaggacggctcttacaacgagtttaaaaaa
ctccaagcgcaaaaacgcttcaatgaaaaaatggacttgctgagttctttggcgaaaaat
taccaaaatttagggcgttttttaaacggcactttaataggctcaaatgaagccacgcaa
ggctgtggcgtgaatttattgagcgtgcatgcttctaaaggcttagaatttaaagatgtc
tatattatagatttaatggagggccgtttccctaaccacaagctcatgaacaccggtggg
ggcattgaagaagagcggcggcttttttatgtcgctatcacaagggctaaggaaaattta
tggctttcttatgcgaaaaacgaattgagagaaaacgccaaaccaaaagagcataagccc
tcggtgtttttgtatgaagcggggcttttgaaacccgattcaaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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