KEGG   Halomonas chromatireducens: LOKO_00656
Entry
LOKO_00656        CDS       T04292                                 
Name
(GenBank) Putative DNA ligase-like protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hco  Halomonas chromatireducens
Pathway
hco03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LOKO_00656
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hco03400]
    LOKO_00656
Enzymes [BR:hco01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LOKO_00656
DNA repair and recombination proteins [BR:hco03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LOKO_00656
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: AMC99742
UniProt: A0A0X8HBT1
Position
complement(683193..685748)
AA seq 851 aa
MKKLKEYHRKRDFENSLEPAGEEGATSATGKLYIMHKHAASHDHFDLRLEQDGVLRSWAL
PKGPSLVPGEKRLAVEVEDHPLEYGEFEGVIPEKSYGGGTVMLWDCGAWQIKGKSTKDRL
DIELDGERLKGSWTLTRMSGKRQDKHGRNWLMIKRSDDNQRMDDSLTVDLDTSIASGRSM
EEIADDRDHTWCTTNDTDETLDGDPLDPKALRGARKARLPRDVKPQLATLAREVPTKGNW
IHEIKLDGYRLLARLEAGNVRLITRNGKDWTRRFREIAEALEPLAVDSALLDGEVVAMGR
DGVSRFSELQEALSSGRTSALVYQVFDLPYFQGHDLASVTLLERKRTLEALLADAGMKEG
KIRYSDHLDTQGKAFHERACQMGLEGIICKRADSRYQQKRSRDWLKVKCVSHEEFVVGGY
TEPGGSRKGFGSLLMGAYGKEGLVYAGRVGTGFSHRLLERLGATLQELEVKRSPFHGGVP
DSRSVHWVRPELVIEVEFTERTRDGRLRHPAFRGLREDRNPKEIRMTPIKEMAAEGAPEE
NTKSAEPAPRKRKGETSLLGVRITSPDRILFPEQGLTKLDLARFYDQIHEWVLPHLARRP
LSLVRCPQGRDDECFFQKHPQRAIPSSVPRVDVPEKKGSAEYVYVESAADLVGLVQAGAL
EIHPWGSRIDHLEQPDNLVFDLDPDEGIAWKEILRVARTLRERIESLGLTPFVRTTGGKG
LHLVVPIEPAAEWDQAKAFAKGVAEAHARDDPQRLTTNMSKAKRKGRIFIDYLRNGRGAT
AVASYTVRARKGAPVAVPIRWDELNAALRADRYNVENLRRRLSALREDPWTGFAEGARPL
DADLLKRVGVK
NT seq 2556 nt   +upstreamnt  +downstreamnt
atgaagaaactcaaggagtaccaccgcaagcgagacttcgagaacagcctcgagcctgcc
ggcgaggaaggagcgacttcggcgacaggcaagctttacatcatgcacaagcacgcggcg
agccatgatcactttgacctgcgcctggagcaggacggcgtgctgcgcagctgggcgcta
cccaaggggccgagccttgtgcccggtgagaagcgccttgccgtagaggtcgaagaccat
cctctggagtatggcgagttcgaaggcgtgatacctgagaaatcctacggcggcggcacc
gtcatgctgtgggattgcggcgcttggcagatcaaaggcaagtcgaccaaggaccgcctc
gacatcgagctcgatggcgaacggctcaagggcagttggaccctgacccgcatgagcggc
aagcgccaggacaagcatggacgcaactggctgatgatcaagcgcagcgatgacaaccag
cgcatggacgattcgctcacggtcgatctcgacaccagcatcgccagcggacgcagcatg
gaggagatcgccgacgatcgagatcacacctggtgtacgaccaacgacacggacgagact
ctcgacggcgatccactcgacccgaaggcccttcgcggcgcccgcaaagccaggcttccc
cgcgacgtcaagcctcaattggccacccttgcccgcgaagtgcccaccaagggcaactgg
attcacgagatcaagctcgacggctaccgtctgcttgcccgcctggaagcagggaatgtg
agattgatcacccgcaacggcaaggattggacccgccgctttcgcgaaatcgcggaggcg
ctggaacctctggcggtggattcggcgctgctcgatggcgaagtggtggccatgggcagg
gatggcgtgagccgcttcagcgaactccaggaggctctctccagcggccgcacgtccgcc
ctcgtctaccaggtctttgatctcccttatttccagggccatgacctggcaagcgttacc
ctgctggagcgcaagcgcaccctggaggcgctgctcgccgatgccggcatgaaggaaggc
aagattcgctactccgaccacctcgacacccagggcaaggcctttcacgagcgcgcctgc
cagatggggctcgaaggcatcatctgcaagcgcgccgacagccgataccagcagaaacgc
agccgcgactggctcaaggtcaagtgcgtcagccatgaggagttcgttgtcggcggctat
accgagcccggcggctcacgcaagggctttggctcgctgctgatgggggcctacggcaag
gaggggctggtctacgccggacgcgtggggaccggcttcagccatcggctgctggaaaga
cttggcgccacactgcaggagctggaagtcaaacgctccccctttcatggcggtgtgccg
gatagccgctccgtacactgggtgcgacccgagctggtgatcgaggtggagtttaccgag
cgcactcgtgacggccgcctgcgccatccggcctttcgcggcctgcgtgaggaccgcaac
ccgaaggagatccgcatgaccccgatcaaggagatggctgccgaaggcgctccggaggag
aacacgaagtcggccgagccagcccctcgcaagcgcaagggcgagacctcgttgctcggg
gtgcgcatcaccagtcccgaccggattctgtttcccgagcagggcctgaccaagctcgac
ctggcgcgattctacgaccagatccacgagtgggtcctgccccacctggcccggaggccg
ctctccctggtgcgctgcccccagggacgcgacgacgagtgcttctttcagaagcatccc
cagcgagccataccgtcaagcgtaccccgtgtcgatgtgccggaaaaaaagggcagcgct
gaatatgtctatgtcgagtcggccgcggacctggtgggcctggtgcaggccggcgcgctg
gagatccacccctggggcagtcgcatcgaccatctcgaacagcccgacaatctggtgttc
gatctcgaccccgatgaaggcatcgcctggaaggagattctgcgcgtggcccgcaccctg
cgcgagcgcatcgaatcgctgggtctcacaccctttgtgcgcactaccgggggcaaggga
ctgcatctagtggtgccgatcgagcccgccgccgagtgggaccaggccaaggccttcgcc
aagggcgtagccgaggcccacgccagggatgatccccagcggctgaccaccaacatgtcc
aaggccaagcgtaagggtcgcatcttcatcgattacctgcgcaacggccgcggcgcaacg
gccgtcgcctcctacacggtacgtgcacgcaagggggcgccggtcgccgtgccgatccgt
tgggacgaactcaacgctgcgctgcgcgccgaccgttacaacgtcgaaaacctgcgccga
cggctctcggcgctgcgcgaggacccctggacgggcttcgccgagggggctcgcccactg
gatgccgacctgctcaagcgcgtcggcgtgaaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (37)   

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