KEGG   Halomonas chromatireducens: LOKO_00840
Entry
LOKO_00840        CDS       T04292                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
hco  Halomonas chromatireducens
Pathway
hco02024  Quorum sensing
hco03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOKO_00840 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LOKO_00840 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hco03019]
    LOKO_00840 (hfq)
   03036 Chromosome and associated proteins [BR:hco03036]
    LOKO_00840 (hfq)
Messenger RNA biogenesis [BR:hco03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LOKO_00840 (hfq)
Chromosome and associated proteins [BR:hco03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LOKO_00840 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AMC99921
UniProt: A0A0X8HC55
Position
892181..892432
AA seq 83 aa
MSKGQSLQDPYLNILRKERIPVSIFLVNGIKLQGQIESFDQFVILLRNTVSQMVYKHAIS
TVVPSRNVRLPPQDPAAQPESNV
NT seq 252 nt   +upstreamnt  +downstreamnt
atgtccaaagggcaatcccttcaagacccgtacctgaatatcctgcgcaaggagcgcatt
ccggtgtcgattttcctggtcaacggcatcaagctgcagggacagatcgagtcattcgat
cagttcgtcatactgctgcgcaataccgtcagccagatggtctacaaacatgccatttcc
acggtggtgccatcgcgtaatgtacgcctgccgccgcaggaccctgcggctcagccggaa
agcaacgtgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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