KEGG   Hippocampus comes (tiger tail seahorse): 109514870
Entry
109514870         CDS       T04969                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03013  Nucleocytoplasmic transport
hcq03015  mRNA surveillance pathway
hcq03040  Spliceosome
hcq05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109514870 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    109514870 (alyref)
   03015 mRNA surveillance pathway
    109514870 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109514870 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hcq03019]
    109514870 (alyref)
   03041 Spliceosome [BR:hcq03041]
    109514870 (alyref)
Messenger RNA biogenesis [BR:hcq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     109514870 (alyref)
    TREX complex
     109514870 (alyref)
Spliceosome [BR:hcq03041]
 Complex C
  Other components
   EJC/TREX
    109514870 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    109514870 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_5 RRM_occluded
Other DBs
NCBI-GeneID: 109514870
NCBI-ProteinID: XP_019723849
UniProt: A0A3Q2YFI4
Position
Unknown
AA seq 266 aa
MTDKMDMSLDDIIKQNRQQRGGGRGGRGRGRGGFGGGRGGGAGRLGMSGGYGGRGGGSGP
MRNRQNTNRARGRPTPYNRPKQLPDKWQHDMFDNGYSGFNGAAGGAGVETGGKLLVSNLD
FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQYNGIPLDGR
PMNIQLVTSQIDTQRRPMQGMNRGGGMNRSRGGSFSMQRGGRIGGRGSGGFRGRGRGGRG
GSGKQQISAEELDAQLDAYNARMDTS
NT seq 801 nt   +upstreamnt  +downstreamnt
atgaccgacaaaatggatatgtctctagacgacattatcaaacagaacaggcagcagaga
ggtggcggcaggggtggaagaggccgaggccgcggaggttttggcggcggccgaggagga
ggcgctgggcgccttggaatgagcggcggatatggaggccgaggtggaggatccggcccc
atgaggaaccgtcaaaacacgaatcgcgctcgaggcagaccgacgccatacaacaggccc
aaacagcttccagataaatggcaacacgacatgttcgacaatggctacagtggattcaat
ggtgcagctggcggcgctggtgtggaaaccggagggaagcttcttgtctccaatctcgac
tttggtgtttctgatgcagatattcaggaactttttgccgagtttgggacactgaaaaag
gctgcagtccattatgatcgttcaggaagaagcctagggactgctgatgttcacttcgaa
agaagggcagatgcactcaaggccatgaaacagtacaatggcatcccactggatgggagg
cccatgaacatacagcttgtcacatcacagattgatacacagaggcggccaatgcagggt
atgaacagaggcggtggaatgaacaggagccgcgggggtagttttagcatgcaacgagga
ggccgcattggagggcgtggctcaggcggcttcagaggacggggacgaggtggtcgaggg
ggtagcggcaagcagcagatttcagcggaagaactcgatgcccaattagacgcttacaat
gcaagaatggacaccagctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (58)   
   KEGG ORTHOLOGY (1)   
   RefGene (54)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (73)   

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