KEGG   Hippocampus comes (tiger tail seahorse): 109519856
Entry
109519856         CDS       T04969                                 
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
  KO
K10754  replication factor C subunit 1
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03030  DNA replication
hcq03410  Base excision repair
hcq03420  Nucleotide excision repair
hcq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109519856 (rfc1)
   03410 Base excision repair
    109519856 (rfc1)
   03420 Nucleotide excision repair
    109519856 (rfc1)
   03430 Mismatch repair
    109519856 (rfc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hcq03032]
    109519856 (rfc1)
   03400 DNA repair and recombination proteins [BR:hcq03400]
    109519856 (rfc1)
DNA replication proteins [BR:hcq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    109519856 (rfc1)
DNA repair and recombination proteins [BR:hcq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     109519856 (rfc1)
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT AAA_22 AAA_30 AAA_5 RuvB_N AAA_19 AAA_17 Rad17 AAA_14 AAA_18 AAA_16 BRCT_2 AAA_7 AAA_33 nSTAND3 NTPase_1 DNA_pol3_delta RNA_helicase
Other DBs
NCBI-GeneID: 109519856
NCBI-ProteinID: XP_019732229
Position
Unknown
AA seq 1166 aa
MDIRRFFAPSAQKATPNGNASTKRNPFSSEEELKKKETKIKKQETDVKRMHDKKRKKHAV
IQSDSDSEDRDTKSKKSPKKKQKISNAAQSLKKEPVHCVLEKDSDSDNFESLKKKSSISK
QNGTSQKSRSSPGLKDAAESSIKSSSVHSKNGAKCPTTPVTPKTAPPPQAKQTPTSVLDY
FGNESIQRSGKKLVASTKRKTPIQDTDEMSDEQIARQLQMVEDDELEKQIHEDEDFARTL
AMLDAEPQAKKVRKSSDEKNVEAFHRKRNSLSPSKNNREDSMSEDMIGPSPKKNPAPLKP
SSKLGMLKKRDEEKDNATKSKAQTKMKISPKKEPFTLSGSEKVQASKRGTGLETSPTEPA
STRPDEAEKKKLNTSAYRNYLNRDGPRALGSREIPTGADNCLEGCVFVLTGVLESMERDE
TKSLIERYGGKVTGNVSKKTTYLVQGRDSGVSKLEKAESFGTKILNEDDLFELIRTKPGK
KSKYEIAAEAESKASKTRTPPGSAPKTRTPPGSAPKTTPKASKISPSKGNSKSPHSPSPS
KTAQTTGRSAKTMDGGTPPGRGSAQTARRELGLSSQNFTSSASKLKSVNEDGATLLWVDK
YRPCSLKAVIGQQGEQSCANKLLRWLQNWYTHHSSAASKPPVARFGKFAAGKDDGSGYKA
ALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNNLKDVVAESLNNTSIESFYKGT
SRKVSTKHVLIMDEVDGMAGNEDRGGMQELISLIKNSKIPIICMCNDRNHQKIRSLANYC
FDLRFQRPRMEQIKGAMMSIAFKEGIKIPPPALNEIILASNQDIRQVIHNLSMWSAKDKV
MTYDQCKSDAASARKDLKMGPFDVCRKVFAAGEETAHMSLIDKSDLFFHDYSLAPLFVQE
NYLHVRPAAAGGNAKSHLVLLSKTADSISDGDLVDRRIRSGQNWSLLPTQAIYASVIPGE
LMRGYMSHFPSFPSWLGKNSSAGKHSRIVQELASHMALKTMSSRQAVNLDYLYFLRQALL
SPLQKLAAEGASEAVRLLDDYQLIREDMDNMMEIGSWGGQPDPYSKLDSKVKAAFTRTYN
KEVHLTPYSLQAIKKGRRGGAEESELEVQDTEKDTPVSEDEGESLSVDAMIKQKKAKAVT
KESKKEKTEDSGKGKGKGKGKAKAKK
NT seq 3501 nt   +upstreamnt  +downstreamnt
atggacattcggagattctttgcgccatcagcacagaaagcgactcctaatggaaacgcg
agcacgaagaggaatcctttttcttcagaggaagagttgaaaaagaaagagaccaagatt
aaaaaacaagaaacagacgtgaaacgtatgcatgacaaaaaacggaaaaaacatgcagtc
atacaatcagactctgactcagaggatcgagacacgaaatccaagaaatctcctaagaag
aagcagaagatcagcaatgctgcacagtctctcaagaaagagcctgttcactgcgtcttg
gaaaaagactcagacagtgacaactttgagtccttgaagaaaaagtcctccataagcaag
caaaatggcacctcccaaaagagcaggtcaagtccaggtctgaaagatgctgcagagtct
tcaatcaagtcgtcctctgttcactcgaaaaatggagccaaatgtcccaccacaccagtc
acaccaaagacggcgccaccccctcaggccaaacaaacccccacctctgtgttggactac
ttcggcaacgaaagcatccagcgctcgggcaagaagctggtcgccagcacaaaacgaaag
actccaatccaggataccgatgaaatgagcgatgaacaaatagctcgacagctgcaaatg
gttgaggatgatgagctggagaagcagattcatgaagatgaagactttgccagaacactt
gccatgctggatgcagagccacaggcaaagaaggttcgtaaaagctcggatgaaaaaaat
gtggaggcattccacagaaagaggaattcactcagcccttcaaagaacaacagagaggac
agcatgtcagaggacatgattggtccttcacccaagaaaaaccctgctccactcaaaccc
agttccaaactagggatgttgaagaaaagagacgaggaaaaagataacgcgacaaagagc
aaagcacagacaaaaatgaaaatctctcccaaaaaggagccatttaccctgtcagggagt
gaaaaggtgcaggcatccaaaagagggactggacttgaaacttctcccactgaaccagcg
agcaccagacctgacgaggcagagaagaagaaactcaacacttccgcttacaggaattac
ctgaacagagatggaccaagagcactgggctccagagaaatccccacgggtgcagataac
tgtttggagggttgcgtgtttgtattgacgggcgttctggaatcaatggaaagagatgag
accaaatccctgatcgagcgctacggcggaaaagtgacgggcaacgtcagcaagaagacc
acctacctggtgcagggtcgggacagcggcgtctccaagctcgagaaggcggagagtttt
gggaccaaaatccttaatgaggatgacctgtttgagctaattaggaccaaaccagggaag
aagtccaagtatgagattgctgcagaggccgagagcaaagcttcaaagaccaggactcct
ccgggctcggccccaaagaccaggactccacccggctcggccccaaagaccactcctaaa
gcttcaaagatctctccctccaaaggcaactccaagtcccctcactctccaagtccctca
aagactgcgcagacaaccggccgtagtgccaaaaccatggatggcggaaccccgcccgga
agaggctcagctcaaactgctcgcagggaattgggactttcttctcagaacttcacctct
tcagcctcaaaattgaaatcggtaaatgaggacggtgccactctgctgtgggtggacaaa
taccgcccgtgttctctgaaggctgtgataggccagcaaggggaacagagctgcgccaac
aagcttctccgctggctgcaaaactggtacacgcatcatagcagcgctgcctccaaacca
ccagttgccagatttggaaagtttgctgcaggaaaagatgacggatcaggttacaaagct
gctctactctccggaccgccgggtgtggggaagaccactacagcggccctggtctgcgag
gagttgggctttagctatgtggaaatgaatgcaagttgcacacgcagcaaaaacaacctg
aaggacgtggtcgcagagtccctcaacaacaccagcatcgaaagcttttacaaaggcacg
tcccgtaaagtcagcaccaagcacgtcttgatcatggatgaggttgatggcatggcgggc
aatgaggatcggggcggtatgcaggaattgatcagcctcatcaaaaattccaagattccc
atcatctgcatgtgcaacgatcggaaccatcagaagatcagatcactggccaattactgc
tttgatctgcgcttccagaggccgcgaatggaacagatcaagggtgctatgatgtccatc
gctttcaaggaaggaatcaagattccgcctccggcacttaatgaaattatcttggcgtcc
aatcaagacatcagacaggtgatccataacctcagcatgtggtcagctaaagacaaggtg
atgacctacgaccagtgcaagtctgacgcagccagcgcccgcaaggacctgaaaatgggg
ccctttgacgtctgccgaaaggtgtttgcggctggcgaggagacggcccacatgagtctc
attgacaagtcggatctcttcttccacgactactcgctagcgcccctctttgtccaggag
aattatctacacgtgcggcctgccgctgctgggggcaatgcaaagtctcaccttgtgctg
ctcagcaagacggctgactccatcagtgatggagacctggtggaccgacgaatccgctct
gggcagaactggtctctgctacccacgcaggctatctatgccagtgtaatcccaggtgag
ctcatgagaggttacatgagtcatttcccgtcgttcccaagctggcttggcaaaaactcg
tcggcaggcaaacattcccgcatcgtccaggagctggcctcccacatggctttgaagact
atgagcagcagacaagcggtgaacctggactacctctacttcctgcggcaggccctactc
agcccactccagaagctggcagccgagggcgccagtgaggctgtgcggctactggacgat
taccagctcatcagggaggacatggataacatgatggagattggttcatggggcggacaa
cctgacccctactccaaactggactccaaggtgaaagcggcattcacgaggacgtacaac
aaggaggtccatctgacaccgtactccctgcaagctatcaagaaggggcggcgcggcggc
gccgaagagtctgaactggaagtgcaggacaccgagaaggacaccccagtgtctgaggat
gaaggagagagcctcagtgtggatgccatgatcaaacagaagaaggccaaagccgtcacc
aaggaatctaagaaggaaaagactgaggattctgggaaggggaaggggaagggaaaaggc
aaggctaaggctaaaaagtga

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