KEGG   Hippocampus comes (tiger tail seahorse): 109527093
Entry
109527093         CDS       T04969                                 
Symbol
col27a1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109527093 (col27a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:hcq00536]
    109527093 (col27a1)
Glycosaminoglycan binding proteins [BR:hcq00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   109527093 (col27a1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 109527093
NCBI-ProteinID: XP_019744353
Position
Unknown
AA seq 1825 aa
MLCWVSRWTLCLLGFMNMCRGAPGDFPTLIDSEGESGSGMLHTDEVNILQEFSIRLANSK
NTSVMVEDGRCPVLQVGQYSVLALPLSQLFTEGFADEFSLLVQLKSPQRVESSVFTMLSP
DGHIMLQLRISAFTLILTEAQQRHYEFPIRDLTDGKWHRIAVSVSGQRVAIFVDCAVLES
VDWVNQGLGIKTDGLFIIGGIIEGFETPFEGHLRQFTFLMDNPDAARQHCSHHPPRCGGD
DTFKAPRSLHDFDALEILPLSSNDLDDPTGHPEDELLFALRHTQDAMWRRGASRGDGTPP
SGTSRQGAAGHVVVDEDTEFLDLTLQTGGQINPQWKPFKNGIGRNQKGKPGVTSKRLEDN
ITTDKKVDPAGRTSSSFPGKPTSDIIHLDGRNTRKKPVVVFTVAPKLPRAPFDSTGDGTD
SSHVIDQSPSVRKAEEQDRPTTTQNISYMNHPARLQGKLPIKSKSGIISIASKEGGLVPG
SDGKLYRLKPGPPGRMGPPGQEGCDGEAGWPGFKGDKGKIGPEGSPGNKGDRGPPGPPGL
PTLYLWRNTAEEWAAFQQTSFYQLLRAGWPINDGPAGPPGEMGKTGMQGPPGEPGERGRP
GMPGEMGERGPRGPPGRAGAPGRDGENGEDGQQGSQGVAGSQGPWGFRGERGSKGEKGDE
GLTGRKGSRGENGKPGEKGSDGLPGPPGPVGPRGPPGIRGGSGPEGPPGPDGEHGLDGAP
GFPGLTGAPGITGQVGLQGVNGSRGDVGPPGNVGRKGPQGPPGLDGQAGPPGPRGPQGTP
GLSGGAGPKGDPGHVGTVGMRGEPGFEGPMGAAGDCGAPGIPGPTGIRGPDGDTGIPGPK
GDKGFQGASGIPGPQGERGPPGFPGYFGAKGQPGPKGIEGANGETGHQGKKGSGGFKGNR
GPDGRNGNAGPRGNRGRSGQSGPSGQPGPPGLAGHPGPQGPEGKPGTQGNVGGAGPVGNN
GIMGPQGISGERGPDGPLGSMGPQGSPGPQGMTGAPGEKGFTGKPGKEGPQGPVGMYGIH
GTVGMRGHPGAFGERGETGYRGFPGPAGKPGPPGLPGSPGEKGPQGPQGRPGDEGPKGIQ
GAPGAPGLPGDAGAPGKPGPRGSNGSPGAQGPSGPAGMLGLQGAAGLIGAAGERGEKGFP
GLAGDVGLTGLDGQQGQPGNTGDDGPPGWKGDLGDSGPRGQHGPPGLSGERGLAGPKGRQ
GPAGPVGKQGDVGHPGEAGDPGLKGDKGEMGPRGFSGPEGAWGKLGENGERGPKGKKGHI
GFTGEPGLVGEVGSAGPLGLKGSAGTSGSAGPKGIQGQKGESGNSGKAGPDGSRGPVGIP
GVRGVRGDIGQPGPHGQLGKGGAKGDRGAKGEAGQQGLKGAPGAPGPLGQQGEEGLPGIQ
GPSALPGLEGAPGEMGLQGPPGPIGKTGGQGRQGPEGKQGMKGEKGDDGKSGSPGKIGHI
GRRGKRGKAGIRGTRGIRGLKGEKGETGVAGHLGWAGTIGKPGLRGEMGDRGEPGTKGEK
GDMGLSGLPGFDGTKGIRGPVGLPGGVGLQGEKGIIGPPGPRGTSGLPGSPGTFGLKGTK
GYPGLPGLPGRRGLPGPPGFPGRPGPSINMTLTELKALMYVSDKPNYALIQTLLDSLEQE
LRLLMDPPDGTKEHPATTCLELWLCHPEYTSGTYYVDPNQGSSADALLAYCSFSSTSIQT
CIHPEDSQLPTKAWLEESSAEGSFQWLSRLDKGFQFIYPGATLVQMRFLRLHSSTATQKL
TYSCHPGHKLGRSERDIKFLTDTRKQSFLGAIQDCVPGEEMVSGPRESVFEFEDLHLLPV
RDVALMGGRNFTHQFGFSVGPVCFS
NT seq 5478 nt   +upstreamnt  +downstreamnt
atgctgtgctgggtgtctcggtggacactttgcctcctcgggtttatgaacatgtgcaga
ggcgcccccggagatttcccaaccttgattgattccgaaggcgagtctggctccgggatg
ctgcacaccgatgaggtgaacattctgcaggagttttccattcggttagccaacagcaaa
aacacctccgtgatggtggaggatggcaggtgcccggtcctccaggtgggacagtactcc
gtcttggctctccctctctcgcagctcttcactgaagggtttgccgatgagttcagtctc
ctggtgcagctgaagagtccgcagagagttgaaagcagcgtgttcaccatgctgagcccg
gacggccatatcatgctgcagctgcgaatcagcgctttcaccctcatcctcaccgaagca
cagcaacggcactatgagttccccatccgcgatctgactgatggaaagtggcatcgcata
gcagtcagtgtgtctggccagcgggtggcgatatttgtggactgcgctgtgctggagagt
gtggactgggtcaaccaggggctggggatcaaaactgacggactcttcatcattggcggc
atcattgaaggctttgagactccgttcgaaggccatctgcgacagttcaccttcctgatg
gacaacccggatgctgctcggcaacactgcagccaccacccgccgcgctgcggtggggac
gacaccttcaaagctccccgctccctgcacgactttgacgctttggagatcctaccattg
tcctcaaatgacctcgacgacccgacggggcaccccgaggatgagttacttttcgccctt
cgccacacccaagatgcgatgtggcgacgaggtgcttctcgaggggatgggactccgccc
tcgggaacaagtcgtcaaggtgcggcggggcacgttgttgtggatgaggacactgaattc
ttggatctgaccttgcaaaccggcggacaaattaaccctcagtggaagcctttcaaaaat
ggaatcgggagaaaccagaaggggaagcctggagtgacgtcaaagcgtttggaggacaac
atcacgacagataaaaaggttgaccctgccgggaggacatcatcgtcgtttccgggaaaa
ccaaccagtgacatcattcatcttgatggcagaaatacccgcaaaaagcctgttgtggta
tttaccgttgctcctaagcttccccgagcaccctttgactcgactggcgatgggaccgat
tcttctcatgtcatcgaccaaagtccatctgtcagaaaggccgaagagcaggacagaccg
acaaccacacagaacatttcatacatgaaccatccagccagactccaaggtaaacttcca
atcaaaagcaaatctggaattatcagcattgcatcgaaagaaggaggcctggtcccgggt
tcggatggcaaactgtatcgtctcaagcccggaccaccgggcagaatgggccctcctgga
caagagggctgcgatggagaagctgggtggcctggatttaaaggcgataagggtaagatc
ggccctgaagggagtccaggaaataagggtgaccgtggaccaccgggaccaccaggttta
ccaaccctgtacctgtggaggaacactgctgaggaatgggctgccttccagcaaaccagt
ttctaccaattactccgtgccggttggcctattaatgatggccctgctggaccacctgga
gagatgggcaagactggcatgcagggtccccctggcgaacctggcgaacgcgggcgaccg
gggatgccaggagagatgggtgagcggggccccaggggtcctcccggaagagcgggggcc
ccaggcagagatggagaaaacggagaagacggtcagcaggggtcacagggtgttgctgga
tcacagggcccatggggcttccgtggcgagcgaggttccaaaggggaaaagggtgatgag
ggtctcactggtcgaaaaggttcaagaggggaaaatgggaaacctggcgagaagggttca
gatggtttaccaggtccgcctggtcctgtcgggccgagggggcctcctgggatccgaggt
ggcagtggtccagagggcccgcctggacccgatggggagcatggtttagacggcgcaccg
ggttttccgggtctgacgggtgcaccaggcattacaggacaagttggtcttcaaggagtt
aatggctcaaggggggacgttggccctccaggcaatgtcggccgcaaaggtccacagggc
cccccaggtttagatggacaggcggggcctccaggacccagagggccccaaggaacacca
ggactgagtggtggagcagggccgaaaggagatcctggacatgtgggtaccgtgggtatg
cggggcgaacccggatttgaagggccaatgggtgcagcaggggattgcggtgcaccaggc
atccccggacctacgggcatccggggaccagatggggacacggggattccaggccctaaa
ggagataaaggctttcaaggggccagtggtattccaggtcctcagggagagaggggcccc
cctgggtttccaggttactttggagccaagggtcaacctggtcccaaaggcattgagggc
gcaaacggtgaaacgggccatcagggaaaaaagggcagtggtggtttcaagggtaacaga
ggaccagatggacgaaatgggaatgcgggacccagaggcaacaggggacggtcaggacaa
agtggacccagcggacagccaggtccaccgggtttggcgggtcaccctggaccacaggga
ccagaaggaaagcctggtacacagggtaacgtgggtggagctggccctgtgggtaataac
gggatcatgggtcctcaaggaatttctggagaaagaggacctgatggaccattgggttcg
atgggccctcaagggtcaccagggccccagggcatgactggagccccgggcgaaaagggt
tttacggggaaacctggcaaggaaggaccacagggcccagttggcatgtatggtatccac
ggcaccgtgggcatgcgcggccatccgggagcctttggagagaggggtgagaccggttat
cgaggtttccctgggcctgctgggaagccaggccccccaggtctgccaggttcccctggg
gaaaaggggccccagggacctcagggtcgacctggagatgaaggaccgaaaggcattcag
ggtgcaccgggtgctccaggtctcccaggtgacgctggggctcctggaaaaccagggccc
cggggaagtaacgggtcccccggagctcaggggccatctgggccagcaggaatgctaggc
ctgcaaggtgcggctggattaatcggagcagcaggagaaagaggagagaagggtttccct
ggcttagctggtgatgtcggcctgacgggacttgatggacaacagggtcaaccaggtaac
acgggggatgatggaccacctggatggaaaggagacctgggggactctgggccacgaggg
caacacggtcctccaggactatcgggagagagaggacttgcgggcccaaaaggacgacag
ggtccagctggacctgttggaaaacagggggatgtcggccatcccggtgaagcaggagat
cctggattgaaaggagacaagggcgagatgggacctcgaggcttttctggtcccgagggc
gcgtggggcaaacttggagaaaatggtgaaagaggcccaaaggggaagaaaggtcatatt
ggattcacgggtgaaccaggcctggtcggcgaagtgggctctgcaggtcctttggggtta
aagggaagtgcgggaacttctggatccgcagggccaaagggaattcaaggacaaaagggg
gagtctggtaacagtggtaaagcgggacctgatgggtcaagaggccccgtgggaatacct
ggagtgcggggtgtcagaggcgacattggacaaccgggaccacatggtcaactaggaaag
ggtggcgctaaaggtgaccggggagctaaaggggaagcgggacaacaagggctgaaagga
gcgcccggagcaccaggcccactagggcagcagggagaagaaggcttaccaggaatccaa
ggtccttcggctcttcctggcttagagggagctcctggagagatgggacttcagggccct
cccggtcccattgggaaaactggagggcaaggaagacaaggacctgaggggaaacagggc
atgaaaggcgaaaagggagatgatggcaagagtggttcaccaggaaaaatcggtcatatt
gggcggaggggaaagcgaggaaaagctggaattcgaggaaccaggggcatcagaggacta
aaaggtgaaaagggggagacgggagtagcaggccaccttggctgggcaggcaccattggt
aaacctggtcttcgtggagagatgggggatcgaggtgaaccgggaacaaagggtgaaaaa
ggtgacatggggctatcgggactacctggatttgatggcaccaagggtatccgaggaccc
gttgggttgccagggggagttggtctccagggagaaaagggaattattggtccaccaggg
ccgagagggacatcaggcttgcctggatcgcctggcacatttggattgaagggtacaaag
ggctacccgggtttacctggtctgccaggtagaagaggcctcccaggtccgcctggtttt
cccggtcgtccaggaccatccataaacatgactttgacagaactcaaggctctcatgtat
gtgtccgacaagcccaactacgctttgatccaaactcttctggattctctagagcaggaa
cttcgtctcctgatggatcctcctgatggcaccaaagagcatcccgccaccacctgtctc
gaactttggctctgccacccagaatacaccagtggaacatattatgtcgacccaaaccaa
ggcagctccgctgacgctctgcttgcctattgcagcttctcgagcacatcaatacagacg
tgcatccatcctgaagattctcagttgcctacgaaagcctggctggaagaatcttctgca
gagggctcctttcagtggctcagcaggctggacaaaggatttcagtttatttatccaggt
gccaccttggttcaaatgcgtttcctgaggttgcacagtagcacagccacgcagaagttg
acctactcctgccacccgggacacaagttgggccggtccgaaagggacatcaaatttctc
actgacacaaggaagcaaagtttcctcggagcaattcaagattgtgtgcctggagaggag
atggtgtcaggaccccgggagtcggtgtttgagtttgaggacctccacctacttcctgtg
agagacgtggcgctaatgggtggtagaaactttacacatcagtttggcttcagtgttgga
cccgtttgctttagttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (72)   
   KEGG ORTHOLOGY (1)   
   RefGene (68)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (5)   
   Pfam (5)   
All databases (89)   

Download RDF
DBGET integrated database retrieval system