KEGG   Hippocampus comes (tiger tail seahorse): 109532617
Entry
109532617         CDS       T04969                                 
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2
  KO
K14327  regulator of nonsense transcripts 2
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03013  Nucleocytoplasmic transport
hcq03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    109532617 (upf2)
   03015 mRNA surveillance pathway
    109532617 (upf2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hcq03019]
    109532617 (upf2)
Messenger RNA biogenesis [BR:hcq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     109532617 (upf2)
   mRNA cycle factors
    P-body specific factors
     109532617 (upf2)
SSDB
Motif
Pfam: MIF4G Upf2 DUF1722
Other DBs
NCBI-GeneID: 109532617
NCBI-ProteinID: XP_019753097
Position
Unknown
AA seq 1300 aa
MSHGNQTSMTDVCFPLTHSMPAERKRSVNMDEKDACSASSKDIEKDRDAERKAAAAAAAV
LRDKAKDEAKMSGKKDVGKDEKRKRQEEERKKKEEKERKKKEEEKQKAEEEQKQKEEEVK
KQQEEQERKFQEDEAKRQREEEAAILKEQEEGQQLHQEAWERHHCRKELRGKNQNAHEAR
PEEAFFSRLDSSLKKNTAFVKKLRTLTEQQRDSLSNDFASLNLSKYIGEAVGSVVEAKLK
ISDVGCAVHLCSLFHQRYGEFAPLLLQAWKKHFEARKEDKAPNVSKLRTDLRFLAELTIV
GFFTDKEGLSLIYEQLKNIIGADRDTHTHVSVVISFCKHCGDDIAGLLPRKVKMAADKYG
LAFPPSEIISTEKQQPFQNLLREYFTSLAKHLKKDHRELQNIERQNRRILHSKGELSEDR
HKQYEEFATSYQKLLANTQSLADLLDENMPDLPQDKTVQEEHGPGIDIFTPGKHGEYDLE
GGLWEDEDARNFYENLVDLKAFVPAILFKDNDKGGQSKDKDEAKDGREAKEAASTTEELE
LELEALDIADEALELEGTDEAESEELNKKLIDEQEQEDEETNTGSHLKLIVDAFIQQLPN
CVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDMA
EDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTH
HHVEMACTLLETCGRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNP
PPMEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDAEVKSYLICCMVNIW
NVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGE
LYNYRMVESAVIFRTLFSFISFGVNQDGSPSSLDPPEHLFRVRLVCTLLDTCGQYFDRGS
SKKKLDCFLIYFQRYIWWKKSVDAWTKEHPFPIDIDYMITDTLELLRPKMRISSSMEEAS
RQVLDLEREVLVKLGLAMEKEGRSSAMSEGEVLDEDEDDEDEEGGAETEEQSGNESEINE
PEEDEASDNEEEERDEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFI
QALDKMMLENLQQRSGETVKVHQLDVAIPLQLKSQLRKGGSSQSCIGEPDADVSDTMQFV
MLTRRGNKQQFKILHVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEML
QSLAQRPAQANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq 3903 nt   +upstreamnt  +downstreamnt
atgtcacacggaaatcaaacgtcgatgaccgatgtttgttttcctctcacccatagtatg
cctgctgaacgcaagcgctcagtaaacatggacgagaaagatgcttgttccgccagcagc
aaggatatagagaaggacagagatgcggagcggaaagcggctgcggcagcagcagctgtg
ctacgggacaaagccaaagatgaggccaagatgagtggcaaaaaggatgtcggcaaagac
gagaagaggaagcgccaggaggaggagaggaagaagaaagaggagaaggagcggaagaag
aaagaggaggagaaacagaaggcggaggaagagcagaagcagaaggaagaggaggtgaag
aagcaacaagaggagcaggagagaaagtttcaagaggatgaagccaaaaggcaacgtgag
gaggaagcggctatcctgaaggaacaggaagaggggcagcagctgcaccaggaggcctgg
gagcgccaccactgccggaaggagctgcgcggcaagaaccagaacgcccacgaggcccgt
ccggaggaggccttcttcagccgcctggactccagcctgaagaagaacacggcttttgtc
aagaagctgcgcacgctcaccgagcagcagcgcgactcgctctccaacgactttgcctcc
ctcaacctcagcaagtacatcggcgaggcggtcggctccgtggtggaggccaagctgaag
atctcggacgtgggctgcgccgtacacctgtgctcgctcttccaccagcggtacggcgag
ttcgccccgctgctcctgcaggcctggaaaaagcactttgaggcacgcaaggaggacaag
gcgcccaacgtcagcaagctgcgtaccgacctgcgcttcctggccgagctcaccatcgtg
ggcttcttcaccgacaaagagggcctgtccctcatctacgagcaactcaagaacatcatc
ggcgccgaccgcgatacgcacacgcatgtgtcggtggtgatcagcttctgcaagcactgc
ggcgacgacatcgccggcttgctgccccgcaaagtcaagatggccgccgacaagtatggc
ctggccttcccgccgagtgagatcatcagcactgagaagcagcagcccttccagaacctg
ctgcgcgagtactttacgtccctcgccaagcacctgaagaaggaccaccgggagctgcag
aacattgaaaggcagaacaggcgcatcttgcattccaaaggggagctgagtgaggaccgc
cacaagcagtacgaggagttcgccacatcctatcagaagctgctggccaacacgcagtcg
ctggctgacttgctggatgaaaacatgccagatttgcctcaggacaagaccgtgcaggaa
gaacacggccccggcatcgacattttcacccccggcaagcatggagagtatgacctggag
ggcggcctctgggaggacgaagacgcgcgcaacttctacgagaacctggtggacctgaag
gcgttcgtccccgccatcctcttcaaggacaacgacaagggcggacaaagcaaagacaag
gatgaagccaaagatggccgagaggcgaaggaagctgccagcaccacggaggagctggag
ctggagctagaggcgctggacatcgccgacgaggctctagagctggaaggaaccgatgag
gccgagagtgaagagctgaacaaaaagctcatcgatgagcaggagcaagaggacgaggag
accaacacgggatcccacctgaagctgattgtggacgcgttcatccagcagctcccgaac
tgcgttaaccgagacctcatagacaaggccgccatggacttctgcatgaacatgaacacc
aaatccaacaggaggaagctggtgcgagcgctcttcaccgtgccccggcagaggttggat
cttctgcctttttactcccgcctggtggccactcttcatccctgcatgtcggacatggcc
gaagacctctgctccatgctgaagggagacttcaggtttcacatacgcaagaaggaccag
atcaacatcgagaccaagaataaaacggtccggtttatcggggagctggccaagttcaag
atgttttccaagacggacacacttcattgcctcaagatgttgctgtctgatttcacgcat
caccacgtggagatggcgtgcaccctgctggaaacctgtggccgcttcctcttcaggtcg
cccgactctcacctgcgcactagcgtcctgctggagcaaatgatgcgtaaaaagcaggct
cagcatctggatgcgcgctacgtgaccatggtggagaacgcctactactactgcaacccg
ccgcccatggagaagacggtgaagaagaagaggccgccgctgcaggagtacatccgcaag
ctactgtacaaggacctatccaaggtcaccacggagaaggtgctccggcagatgcgcaag
ctgccctggcaggacgccgaggtgaagagctacctgatctgctgcatggtcaacatctgg
aacgtcaagtacaacagcatccactgcgtggccaacctgctggccggcctggtggcctac
caggaggacgtgggcatccatgtggtggacggcgtcctggaggacatacgcctgggcatg
gaggtcaaccagcccaagttcaaccagcggcgcatcagcagcgccaagttcctgggcgag
ctgtacaactaccgcatggtggagtcggccgtcatcttccgcacgctcttctccttcatc
tccttcggcgtcaatcaggacggcagccccagctccctggatccccccgagcacctcttc
cgtgtccgcctcgtgtgcacgctgctcgacacgtgcggccagtattttgaccgaggctcc
agcaagaagaagctcgattgtttcctcatctacttccagcgctacatctggtggaagaag
agcgtggacgcctggaccaaagagcaccccttccccatcgacattgactacatgatcacc
gacacgctggagctcctgcggcccaaaatgaggatcagctcgtccatggaggaggccagc
cggcaggtgctggacctggagcgagaggtgctcgtcaaacttggtctggccatggagaag
gaaggccgctccagcgccatgagcgaaggggaagtcctggacgaggatgaggacgacgaa
gacgaggagggcggcgccgagacggaggagcagtcaggcaatgagagcgaaatcaacgaa
cctgaggaggacgaggcgtctgacaatgaagaggaggagcgggatgaggaggaagaggag
aacacagactacctgacagactccaacaaagagaacgagacggatgaggagaacaacgag
gtgaccatccgcggcggcggactgaagcacgtggcctgcgccgaggacgaggacttcatc
caggccttggacaagatgatgctggagaacctgcagcagcggagcggcgagaccgtgaag
gtgcaccagctggacgtggccatccctctgcagctgaagagccagctgagaaagggcggc
tccagccagtcgtgcatcggcgagccagacgccgacgtctccgacaccatgcagttcgtc
atgctcacgcgcaggggtaacaagcagcagttcaaaatcctgcacgtgccgctgtcatct
cacctggccgccaaccacttcaaccagcagcaggccgagcaagaggaacgcatgcggatg
aagaaactcaccctggatatcaatgagcgccaggagcaggaggactaccaggaaatgctg
cagtccctggcccagcgcccggcgcaggccaacaccaaccgtgagcgacggccccgctac
cagcaccccaaaggcgcccccaacgccgacctcatcttcaagaccggaggaaggagacgc
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (54)   

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