KEGG   Halomonas campaniensis: FF32_17305
Entry
FF32_17305        CDS       T03198                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
hcs  Halomonas campaniensis
Pathway
hcs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hcs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FF32_17305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hcs03019]
    FF32_17305
   03009 Ribosome biogenesis [BR:hcs03009]
    FF32_17305
Enzymes [BR:hcs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     FF32_17305
Messenger RNA biogenesis [BR:hcs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FF32_17305
Ribosome biogenesis [BR:hcs03009]
 Prokaryotic type
  rRNA processing factors
   FF32_17305
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AIA76530
Position
3715032..3718523
AA seq 1163 aa
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITTEAGKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALG
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVLLPNPEMDTPHY
DVQRLRDDHLDDDESLTLSSFELSTDTEVGKEPDPSFTPPAMRAEAAVKSVVHNAPAPAS
LQTEERAERAAKADKAVTATPPSTEEQPSVIGRFIRGFAKLLGGEDTSTSQPEPEAPVAR
KQPERTSKNRSQRSESKPKPARERGESASRNEQRSQQQSSNQQPSNPQPSQPRNADNNDD
ANDKRSGPSRTRNRRRHPQQDDAKLQDNDQKSSRQKEQQTNLAAKESPKDEAAKPTAQPE
NRRDKPRDAKPKNEATRESASQTDDKQDDGKPKRTRNNPRNRTRKQAVNPQAEAEQLKLQ
AAAAEAPSADAPSAEAAVESPAVEAPAVEVNSSKAAPASPSLQDGASTTAAPTAEAVTEA
PEPAVEESAAADGTTAERPAEKAEKARKATRQRRQPQQAAEKAEPEAEERVEKSAEAKPQ
QPTDDATAAQEAPQEAASGSSEVVKADAGVELEEESSSNVKEFDTANSESVSSRGEETAK
ETDKPQQSASQAAESQELVRQEPVLSQEPQETAQETSADANTHAEAPKAAETAETAETAE
TAETADSDANTQTLSQSVAASIEASSPEFAEQPEAPSLDKDAVSNTPASDTTAASETVSK
AASETANNSAAAQEGTEQPTLATNEEVQTPSPEAPVETVAPEEAKQAPAASTQDEAPKPR
RRRRRAHNDPRELRKQAQNTTNE
NT seq 3492 nt   +upstreamnt  +downstreamnt
atgaaacggatgctgattaacgcaacccagccagaagagctgcgggttgcgctggtagac
gggcaacgcctttacgatttagacatcgaatctggcgctcgagaacagaagaaagccaat
atttaccggggtaaaatcacccgggtagaaccttcccttgaagccgcttttgttgatttt
ggcgccgaacgccacggtttcctgccactaaaagaaatttcccgcgaatattttatcaaa
gatgtgtctggtcgccccagcatcaaagaggtgctgaaagagggccaggaagtcatcgtc
caagttgataaagaagagcgtggcaataaaggggcagcactgactacctttatcagctta
gcgggccgttttctcgttctgatgccgaacaatccccgtgcaggcggcatttcacgccgc
attgaaggtgatgaccgcagccagttgaaagatgccatgggccaactgacagtgccagac
aaaatgggcctgatcgttcgcaccgccggtatcggccgtagcccagaagagctgcagtgg
gacttggattacctcgtccaagtgtgggagtccattaccactgaagctggcaagcgctca
gccccattcctgatttaccgcgagtctaatgtcattatccgcgccatgcgcgattatcta
cgccaagacattggcgaggtgttaattgacagccccgagattcatgcagaagcactgggc
tttattcgtcaggtaatgccctcttaccagcagaaaattaaactctacgccgatgaagtt
ccgcttttctcgcgtttccaaattgagtcgcaaatcgaaactgcttaccagcgcgaagta
aaacttccttctgggggctccattgttatcgatcacaccgaagcgctggtctctattgat
atcaactctgcccgggctacacgtggcagcgatattgaagaaaccgcgctgcaaaccaac
tctgaagcagccgatgagattgctcgacagttgcgcctgcgtgatatcggtggcctcgtc
gttatcgactttatcgatatgggccctgcgcgcaatcagcgcgaggttgaaaatcgcatg
cgcgatgccctgaagctggatcgtgctcgcgttcagattggtcggatttctcgctttggc
ttaatggaaatgtcacgtcagcggctgcgcccctcgctaggcgaaaccagcggtgttgtt
tgtccgcgctgtaacggccaaggcactattcgcgatgttcgctcgctttcgctctctatc
atgcgcctgattgaagaagaagctatgaaagagcgcagcgcacaaatccgcgccattctt
ccagtacctgtcgcgacctacctactgaatgaaaagcgcagcgttctagcagacatcgaa
tcacgtcaaggcgtacgcgtagttctactgccgaatcccgaaatggatacgccgcattac
gacgttcagcgactacgtgatgaccacctagacgatgatgaaagcctgacgctatccagc
ttcgagctttcgactgatactgaagtaggtaaagaacccgatcctagcttcactccgccc
gccatgcgtgctgaagcagcggttaaaagcgttgtacataacgcaccagcgcccgcctct
cttcagactgaagagagggcagagagagctgccaaagcagataaagccgttacagcgact
cccccctccactgaagagcaacccagtgtgattggccgctttatcagaggcttcgccaaa
ctgctaggcggtgaagataccagcacgagccagcctgaaccggaagctcctgttgcccgc
aagcagcctgaaagaacgagcaaaaatcgctcacagcgcagcgaaagcaagccaaagcct
gcccgtgaacgtggcgaaagtgccagcagaaacgagcagcgcagtcagcagcaatcgagc
aatcaacagccgagtaacccgcagcctagccaaccgcgcaacgctgataataacgacgac
gctaacgataaacgtagcggtcctagtcgtactcgcaaccgtcgacgccaccctcagcaa
gacgatgccaagctccaggacaatgatcaaaagagcagtcgtcaaaaagagcagcagaca
aacctagcggctaaagagtcacctaaagatgaggcggctaaacctactgctcaaccagaa
aatcgtcgcgacaaaccacgtgatgccaagcctaaaaacgaagctacccgtgagtctgca
tcacaaacggacgacaaacaggatgacggcaagccgaaacgcacgcgtaacaatccgcgc
aaccgcacgcgtaaacaggccgttaatcctcaagccgaagcggaacagctgaaactgcaa
gccgcagcggctgaagctccctctgcagacgctccttctgctgaggctgctgttgaatca
cctgctgttgaagcgcctgctgttgaagtgaacagcagtaaagcagcgccggccagcccc
tctttacaagatggggccagtacaacagctgcaccaactgccgaagcagtgactgaagcg
cctgaaccagctgtagaggaatcagcagctgccgatggaacaacggctgagcgccctgcc
gaaaaggcggagaaagcacgcaaggctacgcgccagcgtcgccaacctcagcaagcggca
gagaaagcggaacctgaagcagaggaacgtgtagagaaaagcgctgaggccaaacctcaa
cagccaactgatgacgcaactgctgctcaagaagcgccccaagaggcggctagcggttcg
tctgaggttgtgaaagctgatgcgggagtagagctggaggaagagagtagttcaaacgtg
aaagagtttgataccgccaacagcgaatcagtaagctcacgtggcgaagaaactgcaaaa
gagactgacaagccccagcagtcggcatctcaagctgctgagtctcaagaacttgtgcgt
caggaacctgtattgtctcaagaaccgcaggagacggcacaagagacatccgcagacgcc
aacacacatgcagaagcgccgaaagctgctgagactgctgagactgctgagactgctgag
actgctgagactgctgacagtgacgctaacactcagacactctcgcaaagcgtagcagct
agcattgaagcaagctcaccagagtttgctgaacagccggaagcaccttctttagacaag
gacgcagtgagtaacacacctgcttcagacacgacagctgcgtcagaaactgtttcaaaa
gccgcttcagaaaccgcgaataacagcgctgctgctcaagaaggcacagagcagcctaca
ttggcgactaatgaagaggttcaaacgccctcaccagaggcccccgttgaaacagtggca
cctgaagaagcaaagcaagcgcctgctgcttctacccaagacgaggcacctaagccacgt
cgccgccgtcgtcgcgctcataacgatcctcgtgaactgcgcaaacaagcacagaacacg
actaatgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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