KEGG   Pikeienuella piscinae: G5B40_16780
Entry
G5B40_16780       CDS       T06458                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
hdh  Pikeienuella piscinae
Pathway
hdh03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hdh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    G5B40_16780 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hdh03021]
    G5B40_16780 (rpoC)
   03400 DNA repair and recombination proteins [BR:hdh03400]
    G5B40_16780 (rpoC)
Enzymes [BR:hdh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     G5B40_16780 (rpoC)
Transcription machinery [BR:hdh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     G5B40_16780 (rpoC)
DNA repair and recombination proteins [BR:hdh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      G5B40_16780 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid Peptidase_M23 Apocytochr_F_C RnfC_N
Other DBs
NCBI-ProteinID: QIE56947
UniProt: A0A7L5C286
Position
3528299..3532546
AA seq 1415 aa
MNELSNIFTPGTAAPVATFDEIRIGLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVTCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFEQYVVMEPGLTDLTAGQLLTEEEFLEAQDSFGEDAFT
CGIGAEAVREMLAAIDLQELRDRLREDLREATGELKPKKIIKRLKLVENFLDSGNRPEWM
VLTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYAKLDAQGYSSTVKQSKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGKPIIVPSQDMVLGLYYLSLEKEGEPGEGMMFADMAEIEHAL
HEKTITLHTKIITRRDTVDADGNPVRERLETTPGRMKIGALLPKNAAVPFSVINRILRKK
EVGEVIDEVYRHCGQKDSVIFCDRIMTLGFTEAFRAGISFGKDDMVIPDSKWEIVNGTRD
AVKDFEQQYLDGLITQGEKYNKVVDAWSKCTDKVADAMMAEISAVKKDETGRTMEPNSVY
MMSHSGARGSPTQMRQLAAMRGLMAKPSGEIIETPIVSNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVKMEECGTENGITLQAVVTGGEVVSPLSERVLGRI
PAEDVLDPADDSVIVARGEMIDEKTAQKIDDLHVVSIKIRSPLTCEAEDGICANCYGRDL
ARGTRVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASVNDQSFVESTQEGRLEIRNPS
LLTDAEGNIIAISRNVQLVIIDEHGRERATHKLAYGSRLLVKEGDSIERGQRLAEWDPYT
LPVIAEKGGTAKLVDLIQGISMREEMDDATGISQRIVSDWRSAPKGSDLRPAISLVGEDG
EPQKLDNGNPAHYFLSVDAILSVEDGQAIRAGDVLARIPREGARTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGHVQFGRDFKNKQRIAIVPTDEDAEPVEYLVPKGKHIAVQEGDFIQ
KGEYLLEGNPAPHDILAILGIEALADYLVNEVQDVYRLQGVKINDKHIEVIVRQMLQKVE
ITDGGETTMLKGEHVDRFEFDEANEKALREGYRPAEGGPVLLGITKASLQTRSFFSAASF
QETTRVLTEASTQGKRDRLIGLKENVIVGRLIPAGTGGAAMRIKAVAAERDRKVIAEREK
EAAAAAAAAAAATEDAFEVIEGPAEDDGDDNLVVE
NT seq 4248 nt   +upstreamnt  +downstreamnt
atgaatgagctgagcaacatctttactccgggcactgcggcccctgtcgcgaccttcgac
gagatccgcatcgggctggccagcccggagcggatcctttcctggtcctttggcgagatc
aagaagccggagacgatcaactaccggactttcaaaccggagcgggacgggcttttctgc
gcccggatcttcgggccgatcaaggattacgagtgcctgtgcggcaagtacaagcggatg
aagtatcgcggggtcacctgcgagaaatgcggcgtcgaggtcacgttgcagaaggtccgc
cgcgagcggatgggtcatatcgaactggcctcgccggtcgcgcatatatggtttctgaaa
tcgctgccgtcccgcattggtctgatgctggacatgacgctgcgcgatctggagcgggtg
ctctatttcgaacagtatgtcgtgatggagccggggcttaccgacctcaccgcgggtcag
ctcctgaccgaggaggaattcctcgaagcgcaagacagcttcggcgaggacgccttcact
tgcggcatcggcgccgaagcagtgcgcgagatgctggcggcgatcgatcttcaggaactg
cgcgacaggctgcgtgaagaccttcgcgaagcgaccggcgagctgaagccgaagaaaatt
atcaagcggctgaaactggtcgagaacttcctcgattccggcaatcgcccggaatggatg
gtgctgaccgtggttccggtcatcccgcccgagttgcgcccgctggtgccgctcgacggc
ggtcgcttcgcaacctcggacctcaacgatctctatcgcagggtcatcaaccgcaacaac
cgcctgaagcggctgatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcgg
atgctgcaggaatccgtcgacgcgctctttgataacggtcggcgcggccgcgtcatcacc
ggcgccaacaagcggccgctgaagtcgctttccgacatgctgaagggcaagcagggccgt
ttccggcagaaccttctgggcaagcgcgtcgatttctccggccgttcggtgatcgtgacc
ggtcccgagttgaagctgcatcagtgcgggttgccgaagaagatggcgctcgagctcttc
aagcccttcatctacgccaagctggatgcgcagggctattcctcgaccgtcaagcagtcg
aagaagctggtcgagaaggagcgcccggaggtctgggacatcctcgatgaggtgatccgc
gagcatccggtgcttctcaaccgcgcgccaacgcttcaccgtctcggcatccaggcattc
gagccggtgctgatcgaaggcaaggcaatccagcttcacccgctggtctgcgccgccttc
aacgccgatttcgacggcgaccagatggccgtgcatgtgccgctgagccttgaggcccaa
ctcgaagcgcgcgttctgatgatgtccacgaacaacgtgctctcgccggcgaacggcaag
ccgatcatcgtgccctcgcaggacatggtgcttgggctttattacctctcccttgagaag
gagggtgagccgggcgagggcatgatgttcgccgacatggcggagatcgagcatgcgctt
catgagaagacgatcacgctgcatacgaagatcatcacccgccgcgacacggtcgacgcc
gacggcaatccggtgcgtgagcggctggagacgacgccgggccggatgaagatcggggcg
ctcctgccgaagaacgccgcggtcccattctcggtcatcaaccgcatccttcgcaagaag
gaggtcggcgaggtgatcgacgaagtttaccgccattgcgggcagaaggattcggtcatt
ttctgcgaccggatcatgacgctcggcttcaccgaggcgttcagggcaggcatctccttc
ggcaaggacgacatggtcatccccgattcgaaatgggagatcgtgaacggcacccgcgac
gcggtgaaggatttcgaacagcaatatctcgatggcctgatcacccagggtgagaaatac
aacaaggtcgtcgacgcctggtcgaaatgcaccgacaaggttgcggatgcgatgatggcc
gaaatctccgccgtcaagaaggacgagaccggccggacgatggagccgaactcggtctac
atgatgtcgcattccggcgcgcgcggttcgccgacccagatgcgccagctcgccgccatg
cgcggcctgatggcgaaaccttccggcgagatcatcgagacgccgatcgtttcgaacttc
aaggaagggctgaccgttcttgaatatttcaactcgacccacggcgcccgcaagggcctc
gcggatacggcgttgaagacggcgaactcgggctatctcacccgccggctggtggacgtg
gcgcaggactgcatcgtcaagatggaggaatgcggcaccgagaacggcatcacgcttcag
gccgtcgtcaccggcggcgaggtggtctcgccgctttccgagcgggtgctgggccggatt
ccggccgaggacgttctcgaccctgccgatgacagcgtgatcgtcgcgcggggcgagatg
atcgacgagaagacggcgcagaagatcgacgatcttcatgtcgtctccatcaagatccgc
tcaccgctgacctgtgaggccgaagacggtatctgcgccaactgctacgggcgcgatctc
gcccgcggcacgcgggtgaacatcggcgaggcggtcggcatcatcgccgcccagtcgatc
ggtgagccgggcacccagctcacgatgcgcaccttccatatcggcggggccgcgagcgtg
aacgatcagtccttcgtcgaatcgacgcaggaaggccggctggagatccgcaatccgtcg
cttctgaccgacgccgagggcaacatcatcgccatctcgcgcaacgtccagctcgtcatc
atcgacgagcacgggcgcgagcgggcgacccacaagctggcctatggctcgcgcctgctg
gtgaaggaaggcgactctatcgaacgcggccagcggctggcggagtgggatccctatacg
ctgccggtgatcgccgagaagggcggcaccgcgaagctggtcgatctcatccagggcatc
tcgatgcgtgaggagatggacgacgcgaccggcatcagccagcgcatcgtatccgactgg
cgttcggcgccgaagggctccgacctgcgtccggcgatcagccttgtcggcgaggacggc
gagccgcagaagctggataacggcaacccggcgcattacttcctctcggtcgatgcgatc
ctttcggtcgaggacgggcaggcgatccgcgcgggcgacgtgctggcccgaatcccgcgt
gaaggcgcgcggacgaaggacatcaccggtggtctgccgcgggtggcggagttgttcgaa
gccagacgcccgaaggaccatgcgatcatcgcggagatcgacggccacgttcagttcggg
cgcgatttcaagaacaagcagcggatcgccatcgttccgaccgatgaggacgccgagcca
gtcgaatacctggtgccgaaaggcaagcatatcgcggtgcaggaaggggacttcatccag
aagggcgaatatcttctggaggggaacccggccccgcacgacatcctcgccattctcggg
atcgaggcgctggcggactatctcgtcaacgaggtgcaggacgtctaccggcttcagggc
gtcaagatcaacgacaagcatatcgaggtgatcgttcgtcagatgctgcagaaggtggag
atcaccgatggcggcgaaacgacgatgctgaagggggagcatgtcgaccggttcgagttc
gacgaggcgaacgagaaggcgcttcgcgaaggctatcgcccggcggagggcgggccggtc
cttctcggcatcaccaaggcgtcgttgcaaactcggtcgttcttctccgccgcttccttc
caggagacgacgcgcgtgctgaccgaggcgtcgacgcaaggcaagcgcgaccgactgatc
ggtctcaaggagaacgtcatcgtcggccggttgatcccggccggcaccggtggcgccgcg
atgcggatcaaggccgtcgcggcggagcgtgaccgcaaggtcatcgccgagcgcgagaag
gaggccgccgcggccgccgccgccgccgcggccgccaccgaggacgccttcgaggtgatc
gagggtccggccgaggacgatggcgacgacaatctggtcgtcgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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